RnoINT0126488 @ rn6
Intron Retention
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22988996-22992584:-
Coord C1 exon
chr8:22992500-22992584
Coord A exon
chr8:22989053-22992499
Coord C2 exon
chr8:22988996-22989052
Length
3447 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
AGTCTTTCCCTTCCTCTCAGGAA
3' ss Score
9.19
Exon sequences
Seq C1 exon
GGAACCACTGTCTGTTTTCAGGAAACTGTCGCAGATTTTTTCTGATGAGGATAACCATCTCAGCAGCCGAGCGATTCTTTCCCAG
Seq A exon
GTATTGGGAACCCCAAATTCAAGGGAGTCGTGCTTGTAACCCCAACCCTTGGAAGGCTAAGGCAGGAGGATCGCTGTGAATTCAGGGTCAGCCTGGTCTACACAGCAACCTGCAGGCTAGCTAGGGCTATATAACAAGACCAGCAGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAACACAAGGCCTTGGGTTCGGTTCTCAGCTCCGGAAAAAAACAAAAAAAACCAAGACCAGCATGGAACCATGGGAGACTCTGTCTCAAAATATCCCAAGAGTATGGAAATGGGAAATGGGGGAGGGCTCGGTTGGTAAAGTGAGCTCTGAAGCCGGTAAAAGCTGTCTGGGAGACCTGGAGTCCCAGCAGCCAGGGAGGCAGACACAGCGGGACTCGAGAAACCTAGCCCAACGCATCAAACTCCAGGGTAAGCGAGGGACCCTAGCTCAAAAATACAAAGATTAGTATAGGGAATGCTTGGTATCTGTTATTCATTTACTTTTTAAAAAAAAAAGATGTATTTATTTATTATACATAAGTACACTGTAGCTGACTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGTCCTCTGGAAGAGCAGTCAATGCTCTTCACCACTGAGCCACTTCTCCAGCCCTGTTATTCATTGATTTACCTATGTATTTATTTATTTAATGTGTATGACTGTTTGCCTCCAGGTATTTGTGTGTACCATGTACATTCATGGCACCTACAGAGATAAAAGCAGGGCATCAGATCCCCTAGAACTGGGGTTATACATGGTTGTGAATGTGGATGCTAGAAAATCAAACCCAGGTCATGTCCAAGAACATCAAATGCTCTTAACCACTGAGCCATCTCTCCAGCCCCAGGATACTTGATGTTGACCTCTGGCTTAACACACACACACACACACACACACACACACACACACACACACACACACAGTACTGGGAATGTGGCTTAGTCATAGATGTGAAGTCGGTAGGATTCAGGGATGGTGATGTAGACTCTAAGCCCTGCATTCGGAGGATCAGTTGTTCAAGGATAGTTTTGTTTACATAGTGAGATCAAGGGATCTCGTCTCAAAACAAACAAAACAATTCATAAAGCAGGGCCCGGTAGCACATATCTTAATCTCAGCTCTTGGGACGCTGAGGCAGGTGGATCTCTGTGAGTTCAAGACCAGCTTGGTCTACATTGCAAGCTCCAGGCTAGCTATGGCTTAGGAGACTCGGAGCCAGTGGAGGGGAAGCATCTTATTCTGGAAGCATCCTTCCTTTCTTGTTTATAGTGGGCTCAGTTCTCCTTCCTCCTGCTTGTTCTCCCTACTCACAGCCTTATTTCTTCATTCAGTAATGAATGGAGAAAAGCAAGACGCTCAGAGGAAATGACTCCCTAAGGATACAGTTATAGCCGAGGAGGGAAAGGAGCCATGTCTTGGGAATTTCCTTGATAAGCAGGGTTTTGAATGTGGGCCAGTATGTCCGACTTACTGTAGCAGGAGTTGGGTGTGATTAGGGTCAGGAGCTTGTCCTCAGTGTGAATTCTGTGCAGGTGATCATGGGGCCTGATTTCTGGGTCTGGAATATTCTGTCTCCCTTAAGATAGGTGTGTGTTTTACCCACTCACCTCCTGCAGGTCTCTCCCAATGACTCCACCTTCAAGAAGCCTCCCACCTCATCACCTTCACAGTCCCCTTGTGTACCCAGTGTCCCTTGTTTCTGCTTTCCCCGACTGAGTTATCCTGGCTATCCCATCTTTCCCTCGTTAATGGTCAGAGTTTGTCTCATTTGGTCACCCTTGGCTAGTTAGCACTCAAAACAGCGCATGACGGCACAGTCGGTATTCAGTAAATACCACGTGGGGCTGGGGCTGGGGCTCAGTTGGCAGAGGCTTACGCAACATGATGAAGCCCTAGACTCCATCTCCAGCACTGTATACAGTGGGTGAAGCTGGAGCCCCGTGGTAATGGTGGACACCTTTAATCCCAGCGCTTGGGAGGCAGAGGCAGGTGGATCTCTGAGTTCCAGGCCAGCCTGGTCTACAGACCAAGTTGCAGGACAGCCAGGGCTATACTGAGAAACCCCGACTTGGACAAACAAGACAAAACCAAACCAAACCAAAAAATGAGGGAGCTGTGCACACCTGCCACCCTAGCAGTCAGGAGGCAGAGGCAGGAAGATCAAGAGTTCAAAATTACTCTGTGCTACAAAGAGACTTTGAGGTCAGCCAGGGCTACATGAGACCCTGTCTCATAAATAAAGCAAAAAGGAAAGAGGGGGAGGGAGAGGGAGAGGGAGAAAGAGAAGAAAAGAATCTTGTTAGGGATAGAAGGAAGTAAGTAGGTGGCCCTTCTCTGCATACCACTCAGGAACAGAGGCAGGAGGATTCCATATTTGCAAACAGCCTGGGCTACATTTAGACCTTGTCTCAAAACAAAATTAGGAGAAAACAAAATCAAAACAAAAATCCGGGGAACCAGAGAGACGGTTAGTGGTCAAGAACACTTGCAGCCTTTGAGTTTGTTTCCAGTGTTCACAGCTACCTGTGACTAAGCATGTGGGGATCTGATGCCCTCTTCTGGCCGCCTGAGGTACTGCATACACACCACCACCACCACCCCCAACCCCCAAAAATCAAACAAACCAAAACCTTCTAGTGAGAGTGAGGAGGCTTCAAGGGGCAGAAAGCAAACCTCCTGCATGCCAGCCGCCATTTCTGACCCACCAAAAACCAAACACATCCCTGTTCTCGCAGGGGACTCCAGTCTAGATGGGGACAGAACAGACCTTCTTGCTGTCTGAAAAGTACACAGACGTGAGCTCAGGGTCCTCCCAGAGATCCCCAGTTATCCAGTTCTAAGTAGACTGGGGGCAAACATCTTCCCATCCACTCTGGTCTTGCGCTGGCTTCCAGCTTTAGCCATCTGTAGGATAACTCCACACCGTTTGGCGTTAATAGCCTATCTGTGATGTTCTCTTGTTTGAAGGCAGGGTCTCCTGCAGGGACAGGATGACCTTGAGCGCCTGATCTTCCTGCCTCTGTGTGGCGTGCTGGGATGACAGGGATATGCTGACACAGCCAGTTTCTGCACTGCTTGGGATGGGATGCACAGTGCTCCCAACTACAGCCCCAGCCCCTGGCTTGTGATTTAAAAAGGAGCGTTAAATCACACTTATTTCTTTGTGTGGATGTCAGTCAGATCGATCCTCTCAAGGTGGATCCTGGAGATCCTACTCAGTTGTCAGCCTTGGCAACAGCCCCCTCCCTCACCGAGCCAGCTTCCCTGCCCCCAGCGTGTGACATTTGAACGGGACTTCAGTATGTGTGCCTCTGTGAGAAGTGTCACAGGTGGGTCTCAGAGGTAGTCTTTCCCTTCCTCTCAG
Seq C2 exon
GAAGAGACCACTGAGGGACCCCAAGGTGATGACTGCTCCCCAGGAAGTCTGCCGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027:ENSRNOT00000017493:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(13.9=100)
A:
NA
C2:
PF0061714=RasGEF=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]