BtaINT0128470 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040521 | SAMD14
Description
Bos taurus sterile alpha motif domain containing 14 (SAMD14), mRNA. [Source:RefSeq mRNA;Acc:NM_001105018]
Coordinates
chr19:37174637-37174999:+
Coord C1 exon
chr19:37174637-37174756
Coord A exon
chr19:37174757-37174843
Coord C2 exon
chr19:37174844-37174999
Length
87 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CTCCCTGGTCTCCACCCCAGTTT
3' ss Score
6.84
Exon sequences
Seq C1 exon
GAATCCACCCTGAGTGATGATTCCACACCCCCCAGCAGCAGCCCCAAGATCCCAAGTGGTCCCCGGCAGGCGGCCAAGTGTTCCTACCCCTACCACACTCTGTCCCAGTCTTCCGATGAG
Seq A exon
GTAAGCAGGCCCTGACCTCTGACACAGCCAGGTGTGTGGGCCACAGGGCACACCCTGCCCCCTCACTCTCCCTGGTCTCCACCCCAG
Seq C2 exon
TTTCTGGATGAGCCTCTTCCCACCGTCTACCACTGGACCAGTCAGCAGGTGGGCCAGTGGCTGCAGAGCCTCAACCTGGAGCAGTATGCTGCTGAGTTCGCTGCGCGGCAGGTAGATGGGCCGCAGTTACTGCAGCTGGATGGAAGCAAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040521:ENSBTAT00000051851:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=NA C2=0.365
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764712=SAM_2=PU(66.2=82.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAAGTGTTCCTACCCCTA
R:
CAGTAACTGCGGCCCATCTAC
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]