GgaINT0098068 @ galGal3
Intron Retention
Gene
ENSGALG00000009686 | PPP1R9A
Description
NA
Coordinates
chr2:23801873-23803869:+
Coord C1 exon
chr2:23801873-23801992
Coord A exon
chr2:23801993-23803845
Coord C2 exon
chr2:23803846-23803869
Length
1853 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TTTGTTGCTCCCTCACTCAGAGC
3' ss Score
8.27
Exon sequences
Seq C1 exon
AATTTCACGTTCAACGATGACTTCAGTCCCAGCAGCACAAGTTCAGCTGATCTGAGTGGTTTAGGAGCAGAACCCAAAACCCCAGGTTTCTCACACTCCTTAGCACTATCGTCAGATGAG
Seq A exon
GTATGTTGCTGGAATTGTTTAAGGTGGGAATTGATTGTCTTCTTTCTCCCGCAGCATTTGTCTTGATAATTACTCAAGCAACGAAGGGATGGTTTTAGGCAGTATAAAGGGAGAAGAAGATGAATTAATCTTGGCTTCAATATTTTAATTTTTCTTGTTCATATAATAACTATTTTAAACAACTGGCCTATGGTATTATTGTAGGATCGTTATGCAGTATTGTTAAATGCAGCTGCTTTCTAAAGAACTACTCTATCCTCACACATTTCAATATGCTGTTCCTGCGTTCTGTATGTGTATGTGTGGACCTATGTATACATACACTAAAATAGAGGTAATTGAGACAGTTTTGAGACGATAAAGACGCAGTGTAATTGGATAAACATGGTTGAAACGTAAAGCACCTGCACCTAGACTATTTTTACCATGACATATTAAAATAATAATGACCTGTACATGCAATTATTGTGTATTCTGTACCTCAGTGTGTATACAGTGATTAGAGTGTGTATGTGTCAATCCAGTTTGCATTCTTTGTGCTTGCTTTGCACATACACAGTGGATTTTGAGTTTGATTCTTCAAACTAGATGGCTTTTGACCTGTGATAATGTGAAAAAGCATTCCCAACCCCATAAATTAGTGACAGAATTGAGCGGAATATAATATATTGAAAACACATTTCTAAGATACTTGTTTGGCTCAATTGTCAGTGAAGCTGCACAGTCAGACAGCTTACTACTGTACATCCTGTGGACTCAGGAAACCTATGCATTTGTCCTCTTACAAATGCTGAGTAAGAACTTTGTATTTTTTCACTTGAGGTTTGAGCCAGGGTTTTTTTTTAGAGAGGAGGAACTTCAAGAATCTTTGGCTTCCTTTTCTTTTTTCCAATGACAGGCTTGTGTTATTACTGCTGTCATGTTTTGCACAGGTTTAAAGAATGAGAGTCATTCTGTGCCAACCCCCTTCGCCAAAATGGAAGTCTACAAGGCCAGTCGTTCTTTAGCAGTTACTTACTGCAGATTAGAAAGGGTAAACATTTAGAAGAGTCATAGGAGAGTAGTAGATAGGAGACTGCATATACTGTGAATTACTGAAAACGATAAAGAGATCATTCATACTTTATTTAGTATTAATACTGCCTTGATAATACTTTTCATTCTTCTATCATTTTCCTTCCCATTTTATCAAATATTTTAGTGTGACAGTGCCCTGTTCCCACTGGAACTAACAGTGCCCTGGTTCCCACAGAACCAGAAGTTGGAAAATGCTTTCATTTGGCTTGTTTCTACTTGGACTCTTCTAAAATTCCATGTTTGGACAGGTCTATAAAAATGAATAGGTTTTCTCTGTACTCTGCATTGTACCAAGTTGTGCCCTGCCATGGTGAGGCTGCCGTTCTTGGACCTGCTGTAGTGCATTGCTGCGAGCGCTCTCTTGCTCATGGCTCTTGGGCAGACCTCATGTAATTACTTGAAGGAGAATGAAAGGAAAGGGTAGGGAGGGAACCCAGGTCCTGTGGTCTGTTGTCCTCTAAGTAGTTTTTGCTCTTGCAATTGGAGCCGTCACACAAAGTCCCACTGGTTCCAGTGTGTCATGACCAGGAGCTCACAGGGCTTCACTGGCACAATCTCTGGCTTAGCTACCAAATCGTGTGTGTGCTGAGCTTTCAACATAACCTTTCTTCTTCTGGAAGTAATTTTTTTCAAAGAAATCTCTGTTTTTTGAGTAGCCTTATCTGTTTGCGAATCTCGGTGCTACCCTTGCCCGAACTTTTACATGCTGTTACATGTTCTGTATTTTGTTTCTATAATGCTTTTCTTTCCCATTTCTTTGTTGCTCCCTCACTCAG
Seq C2 exon
AGCCTGGATATGATTGATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009686:ENSGALT00000015764:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.775 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]