RnoINT0116449 @ rn6
Intron Retention
Gene
ENSRNOG00000008869 | Ppp1r9a
Description
protein phosphatase 1, regulatory subunit 9A [Source:RGD Symbol;Acc:632280]
Coordinates
chr4:30237978-30238895:+
Coord C1 exon
chr4:30237978-30238097
Coord A exon
chr4:30238098-30238871
Coord C2 exon
chr4:30238872-30238895
Length
774 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
TTTTGTTGCTGCTCCCCCAGAGC
3' ss Score
7.53
Exon sequences
Seq C1 exon
AATTTCACCTTCAATGATGACTTCAGTCCAAGCAGTACCAGTTCAGCAGACCTGAGCGGCTTAGGAGCAGAACCCAAAACGCCAGGGCTCTCCCAGTCCTTGGCACTGTCCTCAGATGAG
Seq A exon
GTACTGTAGTGGCACCATGGCAAAACTTAGTTCCTATGTCCTTTACTTCCTCCATATCCCTCTGTGGGAAGATGACGTTCGGGGGAAGCTTCGGCACAGAAGGCATCAGCACTGAGGTTTTATGTTTAACACAAAATCCCCATGATTCCATTCACCTTGCCTTAACATTACAGAACACTTTCTAAGCCCCTTGAAGCTTCCCGGTGATCCCACTATATATGTAAATGCTAATGTTAGAGGCTGGCCACTGGAGATCAAGACTAGACAAACAGTTTAGGTCACCTGGAAGCTGTAAGTTATCTGCTCTCTCTCTCCTTACAGAGTCACCCATACCCCCCGGACTCTGAGAGTTTTCTGGCTATGATATGCCCCCTGTTGAATCATTACCATCAATAGGCATGGTTCTGGAAAGGAAATAGAGTTAGAATCATTTATTCAGAGGCTAAAGTGAAGATTAGCATTGCTAAGAATTACCAGGAAGTATGTATGCAGGTGATAAGCGGAAAACTAGGTTGGAATTGATTTAGTTCTAAAAATAAGTGGGAGTCGGGGCAGGAAATAATGTAATTAGAGTGTTTTTCTTACATATGAAATAATTGTTCTTAATTCTTTGTAACATGAATTATAGAAAATAAGCCTTTTTCCCTTTAAATGTTTCTGGACGTGTTTTCCTGGCTAGGCTTGATTCTAATGTTGTAGAGCGTGCACGTGGGTGTTGTGTGTCCCATTTCTTTAACATTCTTCTTCTCGGTTCTTTTGTTGCTGCTCCCCCAG
Seq C2 exon
AGCCTGGACATGATAGATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008869:ENSRNOT00000011756:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.927 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]