MmuINT0125209 @ mm9
Intron Retention
Gene
ENSMUSG00000032827 | Ppp1r9a
Description
protein phosphatase 1, regulatory (inhibitor) subunit 9A [Source:MGI Symbol;Acc:MGI:2442401]
Coordinates
chr6:5106121-5107027:+
Coord C1 exon
chr6:5106121-5106240
Coord A exon
chr6:5106241-5107003
Coord C2 exon
chr6:5107004-5107027
Length
763 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
TTTTGTTGCTACTCACCCAGAGC
3' ss Score
4.29
Exon sequences
Seq C1 exon
AATTTCACCTTCAATGATGACTTCAGTCCAAGCAGTACCAGCTCAGCAGACCTGAGTGGCTTAGGAGCAGAACCCAAAACGCCAGGGCTCTCCCAGTCCTTGGCACTGTCCTCGGATGAG
Seq A exon
GTACTGTAGTGGCACCGTAACAGAACTTCGTTTTTATGTGGCTCATTTCCTCCATATCCCACTGTGGGAAGATGTTTGAGGGTAGATTTAACAAAGAAGGCATCAACAGTGAAGTTTTGTGTTTAACACAAAATCCCCATGATTCCATTCCCTTTGCCCTCCACATTAAAGAAAAGTATAGTTTCTGAGCCCATTGAAGCTTCTTGGGAATCCCATTCTACATGTAAACATAAATGTTAGAGTCTGGGCACTGGAGAGCAAGCCTGGGCTGTGACTGATCTGTTCATTCTGTCCTTTCCCAGAGTAACCCCTACCCCCCCACCCCGACTCTGAGGGTCTTTTGACTACCATATGCCCCCTGTTGGATCATTACTATCAATAGGAATGGTTCCGGAAAGGAAATAGAGTAAGAACCATTTATTCAGATGCTAGAGTGAAGATTAGCATTGCTAAGAATTGCCAGGAAGTATGTATGCAGGAGATAAGCAGAAAACTGTGTTGGGATTGGCTTAGTTCTATAAATAGGTGGGAGTCAGGGGCAGGAAATAATGTAATTAGAATTTGTTCTTACAAATGAAATAATTGTTCTTACTTCTTTTTAGCATGAGTTATATGCAATAAGCCTTTTTTTTCCTTTAAATGTTTCTGGTCATGTTTTCCTAGCTGGGCTTGATTTTGATGTTATAAAGCGTGTAATGTTGGTACTGTGTGTCCCATTTCTGTAACATTCTTCTTCTCGGTTCTTTTGTTGCTACTCACCCAG
Seq C2 exon
AGCCTGGATATGATAGATGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032827-Ppp1r9a:NM_181595:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: