HsaINT0130732 @ hg38
Intron Retention
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1 regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr7:95286206-95287133:+
Coord C1 exon
chr7:95286206-95286325
Coord A exon
chr7:95286326-95287109
Coord C2 exon
chr7:95287110-95287133
Length
784 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
TTTATTGCTCCCTCACTCAGAGC
3' ss Score
8.1
Exon sequences
Seq C1 exon
AATTTTACCTTCAATGATGACTTCAGTCCCAGCAGTACCAGTTCAGCAGACCTCAGCGGCTTAGGAGCAGAACCTAAAACACCAGGGCTCTCTCAGTCCTTAGCACTGTCATCAGATGAG
Seq A exon
GTAATTCCATGGCACTATGACAGAGCTGCTTTGTCAAATCTGACGTTTTACCCATGAACCATCACCAGGAAAATGTTTTTAGGGTAGATATTGCATAGAAATCATCAGGACTGTGGTTTATGTTTAATTTGAAGTCTTCATGATTTCTCTCCCTCCCTTTCTCAACAGAAAAGCAAAGTCTTGTTCTTAAGCTTTCCAGGGGCCCCTTTTACACGTATATGTAAACACACATGATGGGGAGGCTGGGCAGTGCAGAGTTAAACATGGGGGAACAGCTCAGAAATCACATAGAAGTTTCCTAATTACTCCTTTCTTTTTTTCCTTGCCTCCCCTGACAACCACACTCACTCCAAGATTCTGATACTGCCTCTGATTAGGGTGAGGTCTCTGATTGAGAATCAATAGTTTTGATAAAGAGGGAAAATAGCATGAGAACCATTTATTTAAAAACAAGGGTCAAAATTAGTATTGCTACAAATTATCAGGAGATAAATGTGTACAAGAGAGTCAGGAAATGAGGTTAGTGATTTAGTTCCTTGAAAAATGGAGGGAGGACAGAAGGCACCATAAATAAAGATATTTTTGCTCTAAATATTTGTTCTTACTATTTCTTTCTAACATGATTTTTTATTCACAAAACTTTTTTTTTTCTTGTAAGCTTTTCTGCCCGTATTCTTCAAGCTTGGTGCAATTTTAATTTTATTAAAATTATGTACTATATATGTTGTGTCTCCTGTTTCTGTAACACTTTTCTTCTTGATTCTTTTATTGCTCCCTCACTCAG
Seq C2 exon
AGCCTGGATATGATAGATGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528:ENST00000433881:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.825 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development