GgaINT0098069 @ galGal3
Intron Retention
Gene
ENSGALG00000009686 | PPP1R9A
Description
NA
Coordinates
chr2:23803846-23805209:+
Coord C1 exon
chr2:23803846-23803869
Coord A exon
chr2:23803870-23805026
Coord C2 exon
chr2:23805027-23805209
Length
1157 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
GCGGCACATTTCTGTCACAGATC
3' ss Score
6.76
Exon sequences
Seq C1 exon
AGCCTGGATATGATTGATGATGAG
Seq A exon
GTGAGATACCAGTGTGCTGTTGTGGTGAATTGCGTGACCATCGCGTGGCAATGTACTGTCTCATTTGCAAATTTGCACTTCTTGTTTCACTGTGTTGTGTGGCAAATCCCCTTGTTCGAGCACAACACACAGATGTCACTGGCTCCTCCTGCCTTGTCTTCAGCTCCCCTCTCCTTTCAAGGCCATGGCAAATTGCAGCTTTTGTGGTATGTTGGAAGGGGGAGGAGGGCCCGTGCCAGAGCACACCCACCAAGCCAAGCATCAGCTGCACTGAGATTCTGCTGGCTGCTGGAGAACGAAAAGACTGTGCTTAAACTGTCTTTTCCCCATCCATGAGAAATGGATGGCCAGAGGCTGAAAGAGCTCCCAACATCATCTAACCCAGTGGTAAAGCTGTTCAAACAGGCGACAGCTGCAGCAGCCTGTAGCAGCTGCTGTGCTGGCTGGGGTTTCCACAGAGTGGCTTTTGTTTCAGGCCCCACCAGCTTTCCCTTGGGTGGAAGGAAGTGGCAGAGAGGACACTCGGGGCTGAAGCAGCTGAAGGCCCACCTGCCCCTCCTGGTGCTGTTTGTGCTCTTCTCCTGGGCAGCACGATGTGTGGAGAGCAGGGTGGAGGCTGTGGGATTGCTGTGTGTTCCTTTCTGTTCCTGTGTCATCTCATAGTCTTCTGTAGGTAACATCAGTCTCGCTGGCTGTTTGGTGTCACCACTTTGAACTTCAGAATGGTTTTTATGAGGCTTTTTTTTCGCCTAAATTTCTTGTTTTGCAGCTTAAATACGCAATAAAGATCAATGAATGTGCCTGGGAAGTGGATAGCATAATTCTAATGGTATCCATTAGAAACCTTGTAACTTGAAGGATAAAGATCTTGTGAGGGAGTGGGAGCTGTACTTGCTTAGACCTGTGCCACCTGGCCATTTCAACCCGTGTGGATGAAAAGGAATGCCAGTTCCTTTCTCCTGATTATAAATAGAAACTTCTTAGGTACCTTGCATCAGTTCTTAGATACCTGGTTAGATGCAGGTGTTAATTTGTTGTTACAGAAGTATAAGGGCAGTAGGGGTACCTCTGCTCTGATGCTGGTGGTTTGTGCAGAAAAATGCTACTGCTGTTCAGTGTTACCCTTCCAGTAATAAGGCGGCACATTTCTGTCACAG
Seq C2 exon
ATCCTCGATGATGGACAGTCTCCAAAGCACAGTCAGTGCCAGAACCGGGCTGTTCAGGAGTGGAGTGTGCAGCAGGTTTCCCACTGGTTAATGAGCCTGAACCTCGAACAGTACGTTTCTGAATTCAGCGCCCAAAACATTAATGGGGAGCATCTCCTTCAACTGGATGGGAGTAAGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009686:ENSGALT00000015764:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.426
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764712=SAM_2=PU(66.2=70.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGGATATGATTGATGATGAG
R:
TTAAGCTTACTCCCATCCAGTTGA
Band lengths:
206-1363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]