GgaEX0014352 @ galGal3
Exon Skipping
Gene
ENSGALG00000009686 | PPP1R9A
Description
NA
Coordinates
chr2:23801873-23805209:+
Coord C1 exon
chr2:23801873-23801992
Coord A exon
chr2:23803846-23803869
Coord C2 exon
chr2:23805027-23805209
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGCTCCCTCACTCAGAGC
3' ss Score
8.27
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
AATTTCACGTTCAACGATGACTTCAGTCCCAGCAGCACAAGTTCAGCTGATCTGAGTGGTTTAGGAGCAGAACCCAAAACCCCAGGTTTCTCACACTCCTTAGCACTATCGTCAGATGAG
Seq A exon
AGCCTGGATATGATTGATGATGAG
Seq C2 exon
ATCCTCGATGATGGACAGTCTCCAAAGCACAGTCAGTGCCAGAACCGGGCTGTTCAGGAGTGGAGTGTGCAGCAGGTTTCCCACTGGTTAATGAGCCTGAACCTCGAACAGTACGTTTCTGAATTCAGCGCCCAAAACATTAATGGGGAGCATCTCCTTCAACTGGATGGGAGTAAGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009686_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.775 A=0.500 C2=0.426
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0764712=SAM_2=PU(66.2=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGGTTTCTCACACTCCT
R:
CACACTCCACTCCTGAACAGC
Band lengths:
110-134
Functional annotations
There are 0 annotated functions for this event