RnoEX0068924 @ rn6
Exon Skipping
Gene
ENSRNOG00000008869 | Ppp1r9a
Description
protein phosphatase 1, regulatory subunit 9A [Source:RGD Symbol;Acc:632280]
Coordinates
chr4:30237978-30240112:+
Coord C1 exon
chr4:30237978-30238097
Coord A exon
chr4:30238872-30238895
Coord C2 exon
chr4:30239930-30240112
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTGCTGCTCCCCCAGAGC
3' ss Score
7.53
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AATTTCACCTTCAATGATGACTTCAGTCCAAGCAGTACCAGTTCAGCAGACCTGAGCGGCTTAGGAGCAGAACCCAAAACGCCAGGGCTCTCCCAGTCCTTGGCACTGTCCTCAGATGAG
Seq A exon
AGCCTGGACATGATAGATGATGAG
Seq C2 exon
ATCCTTGACGATGGACAGTCTCCCAAACACACTCAGAGTCAGAGCCGGGCCGTCCATGAGTGGAGTGTGCAGCAGGTTTCACACTGGTTAGTGGGCCTCAGTCTGGACCAGTATGTGTCTGAATTCAGTGCTCAGAACATCAGTGGTGAGCAGCTCCTGCAGCTGGATGGCAATAAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008869-'40-29,'40-28,41-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.927 A=0.500 C2=0.393
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0764712=SAM_2=PU(66.2=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGGCACTGTCCTCAGAT
R:
TGTGAAACCTGCTGCACACTC
Band lengths:
107-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]