MmuEX0036728 @ mm9
Exon Skipping
Gene
ENSMUSG00000032827 | Ppp1r9a
Description
protein phosphatase 1, regulatory (inhibitor) subunit 9A [Source:MGI Symbol;Acc:MGI:2442401]
Coordinates
chr6:5106121-5108271:+
Coord C1 exon
chr6:5106121-5106240
Coord A exon
chr6:5107004-5107027
Coord C2 exon
chr6:5108089-5108271
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTGCTACTCACCCAGAGC
3' ss Score
4.29
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AATTTCACCTTCAATGATGACTTCAGTCCAAGCAGTACCAGCTCAGCAGACCTGAGTGGCTTAGGAGCAGAACCCAAAACGCCAGGGCTCTCCCAGTCCTTGGCACTGTCCTCGGATGAG
Seq A exon
AGCCTGGATATGATAGATGACGAG
Seq C2 exon
ATCCTTGACGATGGACAGTCTCCCAAACACACTCAGAGTCAGAATCGGGCCGTTCATGAATGGAGTGTGCAGCAGGTGTCCCACTGGTTAATGAGCCTCAGTCTGGACCAGTACGTGCCTGAATTCAGTGCCCAGAGCATCAGTGGGGAGCAGCTCCTGCAGCTGGATGGAAATAAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032827_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=0.500 C2=0.410
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0764712=SAM_2=PU(66.2=70.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGAGCAGAACCCAAAACGC
R:
GCCCGATTCTGACTCTGAGTG
Band lengths:
109-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: