BtaEX0028242 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024426 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr4:12377755-12379981:+
Coord C1 exon
chr4:12377755-12377874
Coord A exon
chr4:12378685-12378708
Coord C2 exon
chr4:12379799-12379981
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGCTCTCTCACTCAGAGC
3' ss Score
8.92
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AATTTTACCTTCAATGACGATTTCAGTCCTAGCAGCACCAGTTCAGCAGACCTGAGCGGCCTGGGAGCAGAGCCCAAAACGCCCGGACTCTCTCAGTCCTTGGTGCTCTCATCCGACGAG
Seq A exon
AGCCTGGATATGATAGATGATGAG
Seq C2 exon
ATCCTTGATGACGGACAGTCTCCCAAACACAGTCAGTATCCGAATCGGGCCGTTCATGAATGGAGCGTGCAGCAGGTTTCTCACTGGCTAATGAGCCTAAATCTGGAGCAGTATGTCTCTGAATTCAGTGCCCAAAACATCACTGGAGAGCAACTCCTGCAGTTGGATGGAAATAAACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024426_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=0.375 C2=0.328
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0764712=SAM_2=PU(66.2=70.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGCAGCACCAGTTCAGCAG
R:
GGAGACTGTCCGTCATCAAGG
Band lengths:
115-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development