GgaEX0014352 @ galGal4
Exon Skipping
Gene
ENSGALG00000009686 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr2:23970466-23973802:+
Coord C1 exon
chr2:23970466-23970585
Coord A exon
chr2:23972439-23972462
Coord C2 exon
chr2:23973620-23973802
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGCTCCCTCACTCAGAGC
3' ss Score
8.27
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
AATTTCACGTTCAACGATGACTTCAGTCCCAGCAGCACAAGTTCAGCTGATCTGAGTGGTTTAGGAGCAGAACCCAAAACCCCAGGTTTCTCACACTCCTTAGCACTATCGTCAGATGAG
Seq A exon
AGCCTGGATATGATTGATGATGAG
Seq C2 exon
ATCCTCGATGATGGACAGTCTCCAAAGCACAGTCAGTGCCAGAACCGGGCTGTTCAGGAGTGGAGTGTGCAGCAGGTTTCCCACTGGTTAATGAGCCTGAACCTCGAACAGTACGTTTCTGAATTCAGCGCCCAAAACATTAATGGGGAGCATCTCCTTCAACTGGATGGGAGTAAGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009686_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGGTTTCTCACACTCCT
R:
CACACTCCACTCCTGAACAGC
Band lengths:
110-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]