HsaINT0130745 @ hg19
Intron Retention
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:14946]
Coordinates
chr7:94916422-94918030:+
Coord C1 exon
chr7:94916422-94916445
Coord A exon
chr7:94916446-94917847
Coord C2 exon
chr7:94917848-94918030
Length
1402 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ACGTAACATTCCTATCTTAGATC
3' ss Score
6.97
Exon sequences
Seq C1 exon
AGCCTGGATATGATAGATGACGAG
Seq A exon
GTGAGCTATCAGTGGGCTGTGTGTGGTGGCTTGTGTGCTATTGTTTGAATGTGTTTTTTCGCTCTTTGGAGATGACTGAAAAATCAGACAATACAAGAATATCTTCCTCTGTAGTGAAGGGTTTCCTTGTGTTAAATAGCTTTACTCTCTGCCTTTGTCATATCTTAGTTTAAAAGATGTTCCTAACTTAAGAGGATCTCCGCATTGCACCTCCAGAGTTCCTCGATTTCTCTTCCATCACCATTACATTGACATGGTCCATTCTTCTTCCTCTCCTTTGCCTTCATCTCAGCTTACCCTATCCCTTCTTCTGTGTTCCCTGTGTGGGTCACCAAGGTGACTCCTGTCTTTCCTTCAAGACCTATCATCACCTTCATCTCCTCTCAGCTTAGTGGGTCTAGGAACCAACCTGTCCCTTTGCACTATTAAAAGGAATATTCTGCAGTGGACAGAGCCAGAAATTTAGAATAAACTCCTAACTATTGAGCTCTACCACTTACTAACTGTGTGATCTTGGGCAGATCACATAGACTTTCTCAGCCTCAGTTTCCTTGTTTCTTTTTTTGTTTTTTAAGACAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTTGGTTCACTGCAACCTCCACCTCCTGGATTCAAGCGATTCTCCTGCCTCAGCCTCTCGAATAACTGGGATTACAGGCATGCGCCACCACCACACTGGCTAATTTTTGTATTTTTAGTAGAGAGGGGATTTCAACATGTTGGCCAGGCTGGTCTTGAACTCCTGGCCTCAAGTGATCCACCCACTTCAGCCTCCCGAAGTGCTGGGATTACAGATGTGAGCCACCATGCCCAGCCATTTCCTCATTTCTTGAAAGTAATGATGGATATTATATGCCCTACCTTCCTCACAGTTTGCTTGCTGCTCAAGTGAAATAATGGTTGTGAAACTTCCCCTAAGAAGGCTTGAGAGCTTAATGCTCTCCTCTTGCAAGTGAAAGATACCTCAGTATTTGTTAATATATTTTTACAAAATTCCAATGTCTTATTAGAGGATAAGTGATGCATTGCATATAGAAATTTATGAAATATTTATTTTCTACATCTTATAATCTGTCCAGACTGTTTTGATGTAAAAGCTTGCAACATTAATATATTTTCTTCAATATTAAACTTCCTACATTAATAATGGTGCTTTTTTATTATGGGGAATTTCTAAACTTCTAAAAACATAAAAACATATAGGTAATAAGTATTTTTTCTAACACCACTAGAACCATTAGCTTATCATATTTTGGTTTAAACATAAATGTGGCTCTCATAGGTTAAGAAATTCCTTTTGATAGCATAATATGAGCCATAGTATCTTGGTCCTTTAACAACACTACGTAACATTCCTATCTTAG
Seq C2 exon
ATCCTTGATGATGGACAGTCTCCCAAACACAGTCAGTGTCAGAATCGGGCCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTAATGAGCCTAAATCTGGAGCAGTATGTATCTGAATTCAGTGCCCAAAACATCACTGGAGAACAGCTCCTGCAGTTGGATGGAAATAAACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528-PPP1R9A:NM_017650:14
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.361
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764712=SAM_2=PU(66.2=70.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGGATATGATAGATGACGA
R:
TTAAGTTTATTTCCATCCAACTGCA
Band lengths:
206-1608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)