BtaINT0128800 @ bosTau6
Intron Retention
Gene
ENSBTAG00000043981 | SBF2
Description
Bos taurus SET binding factor 2 (SBF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001103237]
Coordinates
chr15:43247421-43249875:+
Coord C1 exon
chr15:43247421-43247529
Coord A exon
chr15:43247530-43249761
Coord C2 exon
chr15:43249762-43249875
Length
2232 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
ATTCTTTTTATCTTCTTCAGTTA
3' ss Score
8.23
Exon sequences
Seq C1 exon
TTACCCTTATATTCCTATTCTCCCGGCTCAGCTCCTGGAAGTTCTGAGTTCCCCGACGCCTTTCATTATTGGAGTACATTCTGTCTTTAAAACTGATGTTCATGAACTT
Seq A exon
GTAAGTATTCATCTTTAAATGGCTAGTTATTGAGGTCAGAGGTTTCTTACATTTCTTTGAGTCCTGCCTGCCTGCTAAGTCGCTTCAGTCGTGTCCAACTCTGTGCGACCCCATGAACTGTAGCTTGCTGGGTTCCTCTGTTTGTGGGATTCTCCAGGCAAGAATCCTGGAGTGAGTTGCCGTGACCTCAGTCCTATAGCACTTCAACTAATTACTATTTTCAAATCTGTTCCATTCCCAATAGAAAAGATTGGCTGGAAGCACAGCATCATTAAAAAACCTAAATACATTAATATTTCCTTACAGCAAGTAAAGGAGATTTATAAAATGAATTCACTAATCTTTTAAAATTTCCCTCTTTTGGCATATTAAGTCTTATCTTTCTATATTCTTCATTTCGCATATGAGAAAGGAAGATAAAATTATCCATTTTTAGCAGTCTATTTATGCTTTTATTATGAGTGCTTTAATTTATTCATCTTTTGAAATGAGGTCTGTGATAATGCTACCCACTCCAGTATTCTGGCCCGGAGAATTCCATGGACCGTATGGTCCATGGGTACACAGAGTCAGACACAACTGAGCTACTTTCACTTTTTCACTTGCAAAAAGCAAAAAGCATTTGCAAAGGAATGAAGGGTTTTGGAGGAATACAAGTTTATTGTGAGCTCCCCCCAACTTCTGCCCCCAGATTATTCTGTTCTTAATACTAAATGGAAATACTAAAGGAGAGAAAGTAATACTCTGTATTCAACCAGCTCTTATTCAACCAGTTTAATAAGTAAACTTATTAAAAATAAGTTTACTTCTCTGTAGTGTGCTTTAAGAAGGACTGTAACAAAATTGAACTTCATAGAAGGACATTTAGGATGTCAAGAGTTTAGAAACCATATTCTTTGAGGGCCTGAGAAAATTTTCACAGGTAATAACCTAATGTTATTTGATAGCTAAAGGTAAATATTTAAGTAGCTGTCTTAGAAAGAAGGGGTAGACGCTGAAATAGAATCAGTGGGTATAGTGGGATATAGAAACAATTTTCTGCTCAGTCTAAGAGTTTTCAAGTAAATAGAGCTGCCCGGTATAATGAATGTGTCTCCTTATGTGAAGAGTACTCTAAGTAGAGTGCAAAGACAGATTGCATTACAGTTTTCAGGGAGTTTAAGAAAAATTCTTCATGGAAAGGTTGGGTTATATGACATCTGTGATTCACAAATCCTAAAGAGTTTGTTATTCTAATTTTATTTTAGTTATAAATGCCAGTGAAGAGGTAAGCTCTGTAGGTACTTTTGTATAATTACAATTGTAATCAAATCATAATTGTCATTTAAACTGACAGAAGACCGTCGCACATTGCAGTTATAAACAGGACCCTCATTCTTTTTTCTGACTTTATATATGGATATCTGGTTCCTTTTTAACTTTGATATCAACATACAAAAATACCTATAAATGCATAAACATTAAGTGAAACCTCATTAGTACTAATTAAAAACACACTCATCAGGTTTGTAGACAGTTTTTTTCCCAGTAAATAAAAACAGTCTGTGGAAGTTAGACAAACCAAATATTGACAGAAGTGAATTTCTTAACTTTTCATTGAATAAATTAGAATTAATTTTAATCCTGTTAGCAACATAATACCTTCAATCATTTTGACTGGTTTCTCTATTACATTTTTCATGTTATTTTAAAATAGATTTTGTAAAATGCTAAAAATTAGTGATTTAGCTACCTAAACAGTACTGTTTTGATGTATACTAGTTGCTTTGCTTGTTAACTCTTATGATTACTATGTTATTTAGGATATGGCTGAACTGCTATAATAAAGCATACAAAATGCAATGGCTTAAACAAAATGGAATATTATTTAACACTCATGCAGCAGTTTGTAGAAGTGTTCCATTATGTCAGACCAGTTTGTTCCATGAACTCATTCAAGAAAGGACCATGCTTGTTTGCTTCTTGTTTCTCCGCTAGAATCCACTTAGGCATTGTCAAGATTGTGTTGTTAGTTCAGTTTCAGCGATGGTAAGAGGAAAGAAAGCATAGGAGGGCCTGACTGGACCTCTGTTTTGAATGCCTGAAAATGTGCACATCACTTTTCTCGCTCCATTAGCAGAAACTTGGTCATATGCCACATCTAATTTCAGAGGAAACTGGGAAATATACAGTAGCTGAAAATCAATCTAAAAAGACATTTTATTAATTATATATTCTTTTTATCTTCTTCAG
Seq C2 exon
TTAGATGTAATCATAGCTGACTTGGATGGAGGCACTATTAAAATTCCTGAATGTATTCACCTCTCTTCCCTTCCGGAACCACTTCTACAACAGACTCAAGCAGCTCTTTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043981:ENSBTAT00000039913:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.7=100)
A:
NA
C2:
PF0214116=DENN=PD(5.5=26.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development