RnoINT0130948 @ rn6
Intron Retention
Gene
ENSRNOG00000009812 | Sbf2
Description
SET binding factor 2 [Source:RGD Symbol;Acc:1588657]
Coordinates
chr1:175225210-175228040:-
Coord C1 exon
chr1:175227932-175228040
Coord A exon
chr1:175225324-175227931
Coord C2 exon
chr1:175225210-175225323
Length
2608 bp
Sequences
Splice sites
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
3' ss Seq
ATTTTTAAAATCTTTTTCAGTTA
3' ss Score
7.71
Exon sequences
Seq C1 exon
TTACCCTTATATTCCCATTCTTCCGGCTCAGCTCCTAGAAGTTTTGAGTTCTCCAACTCCTTTCATTATTGGCGTACACTCCATCTTTAAAACTGACGTCCATGAGCTC
Seq A exon
GTAAGTACCCAGACGTCCAGATCCTGAGTCTCTTGTCTTCAGTTTTGCAAGCTTTCCACATCATCAGTATTTTCATATAAGGTACATTTCCAATAGAAAAGAAAGAGTAGAAGAAAAACACCTGTAAGCAATCTAAATATATTTAACTTTGCAAGTATGAGAGCTTAAAAAAGAATCTATGTATTCATTCATATATTTATTTATGAATAAGATGGCTTTGGACAGGGAAGGTGGCTCAGTGGGTTAAAATGCTTGGTTGAGTTCATTGAGTTGTCTGATGTGAACAGTGCAGCAGAAATAAGAGAAACACTGCCTCGAACAAAGTAGAAGGCCAGAATCAGCTCCTGAAAGTTATCTTCTGACCTCCACAGGTGTATCATGGCCTGTGTGTGTCCCTCTCTGTTTCTGTCTCTCTTACAAACTAATTAATTAGTTAATCAAATGACCAATTATAAAACAAAAAAGACAGAGTCTTTCTATGTGACTTAGGCTAGCTTGAAGCTCCTGAGCTCAGAGTAGTCCTTCCCCTTCAGCCTTCTGAGTATGTCCTGGAATGTGCTACAGTGCCCTGATTTTAAATAAGCCCTGTGTACCAGATCAGATTCATCTTAACCATATTCCTCATATGAGAAGTTCTGTATTTCTGTGGGTCAGTGGTTCTTAACCTTCCTAATGCTGTGACCCTTTAATACAGTTCCTCATGTTGTGGTGACCCCAATCATAAAATTATTTTTGTTGCTACTTCATAACTATAATGTTGTTGCTGCTTCGAATTGCAATGTAAATATCTATGTATTCTGATGGTCTTCAGTGAGCCATGGAAAAGGGTCCATTACCCCAAAGGGTTGTCACCACCCAGAGGTTGAGAACAGTTGCTATAGATGATAACAAAGGATTAATAATCCATTGCTTTATTCATATTTTTTACTAATACTTAATTTATTAGTGTTTTAAAATGAGATCTGCCAATATAGAATGTCTGAAAACTAACAAGAATAAAAGAGTTTGCAAGTAGTTTAAATTCAGTAGAACTCAAGTTCTCTTTGAGCTCCCACCAAATTTCTAATCTAATAGAGTGGCTAAAGCTAGTTCAAGAATAATTTGTTTATGGATATCATGCTTCTAGTGGTGTGCATCAGAGGACTTCAGAATCAAAAGGTTAGAAAATGCTGTTCTCGGAGGAAATTGTCTGAGGCAATCATTTAGCTAAAGCTCAATATTTACAGATTCACATAGGGAGGAAGGAGATGGGGGTTGTTTGGAACTATAAAAACTAAAATAGCGTCAGTGGGTATGATACACAGAAACATCCCGCTGGGTGCATTGCCAGATTTCAGACGTGCCCCCTAAAGGAGTGGGATTCCTGGTGTGAGATGAGAAGGGTGTTCTGAAGCACTGTGCCTCAAGTGCAGGGGGCACCTTAGGTGGGTGGTGCTTTTCAGGGAGTATAAGAAAATTTCTTTACCAAAAGAATTTTGTTGCATGACATCTGTAATCCACAAGACTTTGTAATGCTGCTTCTTTTCTAAATGCCAGCCAAACGTGAAGCTTCGGTGTGCCTCACATAGCAACTACAGCTGGAACCATATCAGAGATGTCATTGACTCTATTGAGAGATCAGAGAAGACCCCCATGTGTATACCAGTCCATTCTCTTAACATTGTGTTTCGTTATCTAGTTCTTTTTAACTCCAGTATCAACATAAAAAAATGTATAAGCTAACAAACACGTTTATTAAAAAGGAGGCCCCATGTAACTTGTAAATTATTTTAGTAGTATTAAATAGAGAGATAGGACAAACCAATAGTTGGCAGTTGTAGGTTTCTTCACATTTTAATAAATAAATTAAAATGAATTAAAATCACTTCAAAATCTTTCATTTTTATGTAAGTTATTTTTAAATATGACCTTTTAGAATGCTACAAATCAGATTTCAGGTGTTGTTTTTGTTTCTTTTAGTCTTGGTTTTTGAGACAGTATTACAGTATTAGTATTACAGGTTGATCATGAACTTGAACTCATTACATCGCTAAGGATGGCCTTGAATTCATCCTTCTGCCTCCCAAGTACTAGAATTAAAGGTGTGCATCACCACTCCAAGCTAGGGTTTTCATCTAAACAGTAATTGTTTAATACATATGGATGCTTGTTTTTTGATTCATATGGAATCCAAATGCAAATTCCTCCAAGTGTCTAAGTAGTGGCTCCATAGCACCACTTACCATCCAAGCCTCCTTCCTTATTGCTTTCTCTATTTCAGTCCCTTCAGATAGTGTCATCGTTAGGATGACTAATGCTAGGCTGCTGCCAGTTCCTAGTTCTTTACTATGGAAGGAGAAAGAGGACATAGGAGAGCCTTAGAGCACTGCTCTTCTGAAGCACAGGACTGCCCATATCATTTTTCCTCTTCCCCCGGCAGAAGTGTACTCTTGTACAATACCCAAATTCCAAGGAAGCTGGGACATGTACTATAATGAGGAACTCCTGCTGTGGTAGCCGGGAACCTCTTTCTCAATGGTTTTTTTCTCAGTTTGAGATAGTCAAGGACAATTTACTTAAAAACAAATATATTTTATGAATTGTGGTTAATTTTTAAAATCTTTTTCAG
Seq C2 exon
TTAGATGTAATCATAGCAGATTTGGATGGAGGCACTATTAAAATTCCTGAATGCATTCACCTCTCTTCCCTCCCGGAACCACTTCTTCATCAGACTCAAGCAGCACTTTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009812:ENSRNOT00000013126:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.7=100)
A:
NA
C2:
PF0214116=DENN=PD(5.5=26.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]