BtaINT0128831 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020505 | SBNO1
Description
strawberry notch homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:22973]
Coordinates
chr17:54498483-54502272:+
Coord C1 exon
chr17:54498483-54498795
Coord A exon
chr17:54498796-54502171
Coord C2 exon
chr17:54502172-54502272
Length
3376 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
AAGTTGTCTCTCCTCATCAGCTG
3' ss Score
4.67
Exon sequences
Seq C1 exon
CAGCAGCCTCCATCTACTACAACATTTGTGCTGAATCAAATAAATCAGCTTCCAACCTTGGGATCTACAATTGTAATGACTAAGACACCACCTGTAACCACGAATAGGCAAACCATCACTTTAACGAAGTTCATTCAGACTACTGCAAACACACGCCCTTCAGTCTCAGCACCAGCAGTACGAAATGCCATGACTTCCGCACCTTCAAAAGACCAAGTTCAACTGAAGGACCTGCTAAAAAATAATAGTCTGAATGAACTCATGAAACTGAAGCCACCTGCTAATATTGCTCAGCCAGTTGCAACAGCAGCTA
Seq A exon
GTAAGTCTTTGTTTTCAGTAGTGTCAACTTGCTGCCTTTGTTAAGATATGTCAGTGTGTTTTCAGGGGTGTACTTAGGTCTTGAAAGAACTGAGCATGAAAGATGACGTCTGCATGACTCTCCTTCAAGGGAGCAAACATTTAAAAGCTTTAAGCTTTGAGATAATGTGTGGAATTGAGAAGCTACATTAACACCATGAGATCTCAAGTTTTGTATATTGTGAATAGCTGGCTGACATATTTCTCAGTCCTTTAAATCATTGCTTCTCAAACTTTATACCTGTGAGTCACCTGGGGATCTTTTTATTTAAAAAAAATTATTTATTTTGGCTGCTCTGAGTCTTCTTTGTTACTTATTGGCTTTCTCTGGTAGTGACGAGCAGGGACTCCTCTCTAGCTGCTGTGCTTAGGCTTCTCATTGGAGTCACTTCTCTTGTTGTGGAGCACACACTCTAGGGTGCTTGGGCTTCAGTAGTGTGGCTCTCAGACTCTAGGGTATGGACTCAGTAGCTGTGGTGCATGGGCTTGGTTGCCCATGGCATGTGGAATCTGCCCAGACCAGGAATCTAACCCATGTCCCCTGCATTGGCAGCCTGATTCTTAACCACTGGACTACCAGGGAAGTCTTTACATGGGAGTCTTGTTAAAAAACAGAATCAGATTCAATAGGTCTGGGGTGGGGCCCAAGATTCTGCGTTTCTAACGAACTTTTTAGAGTTGCTGTTACTGGTGGTCTTTGGACCATGCTTAAGGTAACGGGCTGATGCTTTGCTCTAATTCCTACAGTTTTATGATCTTACCTGTCATTAGCTTCATTGCTTGTTGGTAGTTGTGTTTTTAGTAAATTTTTTTTAAAATAAACTTTTATTGTAAACTAATTCACTATATTTTCTTCTAAGTGAGCACTCATAATGCTTTTTAAATAATAGCTTTATTGAGGTAATTCACATACCATTGTACCTTCTAAAGGGGTACAAGTCAGTGGATTTTAGTATATTCACAAGAATTGTTCAATTACCACTAGGTAATCTAATATTTTAAGTGTAGGTTTAGATCTAAAGAGAAAAAGCTCAACAGTGGTTTGATCACTTTTTTTAGAAATTCATTTGTGTGTAAAGAATGTAAATTTTACAGTTAGTTTTTCTTTATAGAGTGGCTTATTTATTCCTCAGTTATTTAAGAGATAATTTGTTTGTTTATTTTTGGCTGAATTGGGTGGCTTGCTGGATCTTAACTCCCTGACCAGGGATCAAACCTGTGCCCTTGGCAGTGAAAGCATGGAGTTCTACCACTGGACTGCTAAGGAATTCTCAAAATGTGAACTCTTGAGAAGGATAGTCTTTCTTTCCTTTTTCTATTGAGTTAAATAGTATTTGCCTGCCTGCCTGGTGATGTATACTAATATGTAACATTCCATTCGGCCCTTGGAATGAGGTTATAGATACTGAGTAGAGTGTTCCTCCTTCCACACAACTGCTTTATTTCCAGCTGTGGGAGATAATGTTTTAACATCTGATGCAGACTGTATGTAATTTTGCAGCAGAATTGATTGCTTGGAAGTTCTAATGTCCTTGCATTTATGAAGTAGAGGGCTGGGGCATTCTGAAGGAATGGGCAAGGAGTGTTTGTAGAGTGATGCAGAACTAACATTGTCTCCAGTGACAAATGTAATAAAAAAAATATCAGATAATCTAACCTTTCCGTTTGAGTCCATACTGTTGTGCTTTATGGCTGTAGTTTTACTCTCAAGGTTACTGTCTTGAACTAACTGGAGCCTGGCAACTTGATGCTCATTGAGAAATCGTTTTAACTATCTTAGGACTGATTTCCAACCTTTGTCATGGAGAGCAGGACCATGCATCTGATCTGAAATGGCTCTTGGGAGACTTAGGGCTGGTCAGCAGTTAGTGGAAGCTGGTTTTCATTAAAGTCTGGGTTTAATGAGGAGAAAGACTACTGCTGTGTCATTGTGAGGAAAGAGTTTAGAGAGCAAAACAGGGTAGATTTGAAGTTGACCAAGTAATATCTAGTACAATAACATCTACATCCAATGTAACAGTTTTTAAAAGACAGATGACTGCAAGTCAAGGCCATCCTTGTGTGGAAGCCTGAGAAATTGTCATACTGGAGGAGGGACGAAAAAGAAACATGATAAATGAATGCTGAAGATAAACTAACTTCTGTGTTGTAGGAGAGGGTCATTTTTTTATTGAAAGGGAAGAAAGATAAACAATGAAATAACAAAGAGCAAGGTTTTGCATGTTCTCTGTCTCTCTTGTCTTTTGTTTTTGGCTGCCCTGTCTGGCTTGTGGGATCCTAGTTCCATGGCCAGGGACTGAACCCAGGCCCTAAGCAGTGAAAGCATGGAGTCCTAACCACAGGACCACCAGGGAATTCCGTGCCTGTTCTCTTCTATCTGTGTGGATATTGCCCCTTTTGCAGTCCTTAGCCCTTTGGGTTTCTCTTTGGATTCTGGTCTCTCAGTTGAGCTCCAGTCCTTTCTATGAAACTGTTCACTGGCTCTTTGATGTGAAACAAATCTGTGTCCCCAAGCTTAAATTTATTATTTCTGTACCAGCTTCTTTATCTTTCTAACGCTTTAATCCTAGTCATTGTGTAGTCCAAAGTGACAGGCCACCAAAGTACTTCCCATCTTTTGATAGAGTACATAAACAAGATGCTGATGCATTCTCCTGATGCGATTTCCACACTGATCTCAAGAATACCAGTACTGGGAATGCTTCAGGGATGGCTGGAGGCTGGTTACAGGGGTTCTGGGTTTCTCAGTCAAGCAGTTCTGCTTTGATTGAGAGGTTCTGTTTTTAATGTTTAAAAAAAGTGTGTAAACCACTAAGAAGCCCAGGTTCTTTGTTTGGATCTTTATTCTGAGGGAAGGAAGACCAGAGTTCCTTGATTTTTTAAAATTTTTTTCTCCCTAATTAAAAGAAATAATTATTTTGTCTGAAAGTTAATAATTACCTCCAGATCAAGTGAGATTGACTGTCTCTGTGATAACACCAGGTGTTGGGTTTTTTTTTTTTTTTTTTTAATGAACTAAGTGAAGTGTCTCAGAATAATGCTAGCCTTTGGTAATTGTTTTGAAATAAACTGCCAAATAGTGTTCTGGTTGAGGTGTCTTTTTAATAAATAGTTTTCAAATTTCCTGTACACACATTTCTTTTTGTTTTCAATTCTTATCTGCATAATGACATGTAGCTTTGAATATTTTTATCCTAACGCTTAATTGGAAATAAGCAGATTTGTATTCTTTGGTTTGTGAAGTGGGTAAACTTTACTGAATTTTTTTTTAAACTGTAGGAAAAACGTTTGTTTGAACAATGTCTTGTTCTAAAATGTAAGTTGTCTCTCCTCATCAG
Seq C2 exon
CTGATGTAAGCAATGGCACAGTAAAGAAAGAGTCTTCTAATAAAGAAGTAGCAAGAATATGGATAAATGACATGAAAATGAGGAGTTTTTCCCCAACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020505:ENSBTAT00000027325:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development