HsaINT1040914 @ hg38
Intron Retention
Gene
ENSG00000139697 | SBNO1
Description
strawberry notch homolog 1 [Source:HGNC Symbol;Acc:HGNC:22973]
Coordinates
chr12:123340988-123345567:-
Coord C1 exon
chr12:123345258-123345567
Coord A exon
chr12:123341089-123345257
Coord C2 exon
chr12:123340988-123341088
Length
4169 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
TTTGACTTTTTCCTCCTCAGCTG
3' ss Score
9.17
Exon sequences
Seq C1 exon
CAGCCTCCATCTACTACAACATTTGTGCTGAATCAAATAAATCATCTTCCACCCTTGGGATCTACAATTGTAATGACTAAAACACCACCTGTAACAACCAACAGGCAAACCATCACTTTAACTAAGTTTATCCAGACTACTGCAAGCACACGCCCGTCAGTCTCAGCACCAACAGTACGAAATGCCATGACCTCTGCACCTTCAAAAGACCAAGTTCAGCTTAAAGATCTACTGAAAAATAATAGTCTTAATGAACTGATGAAACTAAAGCCACCTGCTAATATTGCTCAGCCAGTAGCAACAGCAGCTA
Seq A exon
GTAAGTCTGTTTTCAATAGTATCAACTTTCTCTCTCTGGTAAGCTATGTCAGCATGTTTTTTTAAACGATTTGCTTGGGTTTTTAAAGAACTGGCCATAAAAGGGTGTTATATGCATTATTTTGCGTACTTACAGTCTTTAACACAATTCAAGGGAAGCAAAAGTTTAGATGCCTTGGGTAGGTTGTTTAGCTTTGAAATGTGATTTCTAGGATCATCAGGTAGCTACGTTAGCAACATGAAATCTTACCAGTTTTATATATTATAGGTAGTCAGTTAACATTTTTCTTAATCCTTTACAAATCCTTTACAAATAGCTGTTTACTTGTGACTCATCTGTGGATCTTGTTTGAAAGCAGAATCTGATTCTCAGTAGAGCCCACAATTCTACATTTCTTTTTTCTTTTTTTGAGACGGATTTTCAGTCTGTCACCCAGACTGGAGTGCAGTGGTGCGATCTCTGCTCACTGCAGCTTCCGTCTCCTGGATTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGAATTAGAGGTGCTTGCCACCACACCTAGCTAATTTTTGTATTTTTAATAGAGACGGGGTTTCACTGTGTTGGCCAGGCTGGTCTCGAACTCCTGAGCTCAGGCAGTCTGCCCACCTTAGCCTCCCAAAGTGTTGTTGGGATTACAGGCGTGAGTACCATGCCCGGCCTGCTTGTGTTTTTATGAAATAGAGGGCTAAGAGCATTCTAAAAGAATGGGCGATAAGTGTTTATAGGAAGATGTAGAACTTTGTCTTAAGTGACAGATGTCATTAAAATTTTCAGATCATCTGGTTTTTATGTTTGGGTCCATACCACTGTGTCCTTGTGGCTGTAGTTTTTTGTCTTTTGGTTTTCGTTTTTTGGTTCTCCTCTCAAGGTCATTGTCCTGAACTGACTGCAACCTGGCAGTGAGATGCAAGTTGGGAAATCATTTTAGCTGTCTTAGGACTGATACCATTTTCTGCCGTGGAGTGCAGCACTGTGACCCTGACCTGGCTGAGGTGCAGGGCAGTTTCTGGAATCACTCGCAAGGGACTTGGGGATGGTCGACAGTTGGTGGAAGATGCTTCTCGTTACGGTCTTTGGATTTAATGAGGAAGCCTGCTTCTTATATGAGTGGCTTTCTGAGCATTGTACTCCTCACATCAGCATATGCCATCATAACTTAAAGGAGTGGATGTATGCCATTGTGAGGGAAGAATTTAGAGAACACAACAGAAAACGGGATAGATTTGGAGCTGACTGAACAAGATATCTAGTACAGTAAATTCTCCCACATTTAAGGTAGTGATTTTTAAAAGACAAATGCAGACATTTATCAGGCTGCACAGCAAGACTATCCATGTATGGAAGCCTGAGAAACTGTCAAGCTAGGTCAGGACTAAGAAACAAAGATGGGCCGGACGCGGTGGCTCATGCCTGTAATCCCAGCACGTTTGGAGCCCAAGGTGGGTGGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGCCAAGATGGTGAAACTCCACCTCTACTAAAAATATGAAAATTAGCTGGGCATGATGATGGGCACCTGTAATTCCAGCTACTTGGGAGGCTGAGGCAGGGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTCAGCTGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAGATGGTAAGTGAATGCTGAAGACAAGCAAAGTTTTTTGTTGTAGGAGATGGTCCTCTTTTTACTGAAGGGGAAAAACATTGAAAATATGAAACTGCAGAAAGCAAGGTGTTGCATGTTCTACTTCTTATCTGTGTGGTTGTTGCCCCTTTGGGTTCTAACCTGTCACAATTTCTCTGGTCTTAAAACTAGGAGCTGATCACTGGCTCTTTCACAGTTAAAATAAACAAACCATGCCCCCAAATATCATCTCTGTTCTAGTTTCCTTGTTTAGTTAATACTTTATTTTTATTTTTTATTTTTTTGTGAGACGAAGTCTCATTCCATCGCCCAGGCTGGAGTGCAATGGCGCGACCTCGGCTTCCTGCAACCCCTGCCACTTGAATTCAAGTGATTCTCCTGCTTCAGCCTCCCAAATAGCTGGGATTACAGGCATGAGCCACCAAGCCTGGCTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCATGCTGATCTTGAACTCCTGACCTCAAGTGATCAGCCCACCTCGGCCTCCCAAAGTTCTGGGATTACAGGCGTGAGCACCTGGCCTGTTAATACTTTAATTAGTTGTACTCGTTTTGGAGTCTAAGTGATAGTCCTCCCAAATACTCTTCATCTTTTGCTAGAATAGATGAAATGCTGATCAGCTCTCCTGATGTTAGCACTCTCTTCCCTAAAGGCAGTGATTTCCGCACCTCTATCTCAAGAATTCCAGGTACTGTGAGGACTTCAGGGATTCTTGGAGGCTGAAGGCTGGTTCCAGGGGTTCTGGACTGGATACCTCCCACCCCTATTCAGTCAAGTAGCTCTGCTGATTGATAAGTGGATTCTGAGATTTTATTGCTATATTTAAAAGAGTTTGAAAACCAGTGGTATAGAAGAAAGTGTTCATTGTTTAGATCTTTACTCTGGGAGCAGGAGGAAGTAAGGAGTTCCCAAATTGATTTTTCTTCTTCTAGAAATAATTATTTTGCCTTGAAAATTAGTAAGTACCACCAGATCACATGAAATTGATTCTGTTTGGGTGATAACCCCAGGTTTTGGGTTTTTTTGTTTTTTTTCTTTTTTGAGAGTCTTGATCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCATTGCAGGCTCTGCCTCCTGTTTTCATGCCATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGACTACAGGCGCCCGCCACCACGCCCAGCTAATTTTTTTTTGTATTTTTTTAAATTTTAATTAATTAATTAATTAATTTTTTTGAGACAGAGTTTTACTCTTGTTGCCCAGGCTGGAGTTCAATGATGCAATCTCAGCTCACTGCAGCCTCCGCCTCCCGGGTTCAAGCAGTTCTCTGCCTCAGCCTCCCAAGTAGCTGGGATTATGAGCATGCGCCACCATGCCCGGCTAATTTTGTATTTTTAGTAGAGACTGGGCCTCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCGGCCTTGTTTATTTTTAATGAGTCAAATGAAGTGTCTCAAAGTAATGCTGGCTTTTGGGTATCTTTCTGATAAATAATTTTCAAGCTTCCCTTGCACACGTTCCTTTTGAGTTGTTTTCTAAAGTTAATTCTTTACTTCCATAAAGACACATGGGTTTACATGTTTTCATGCCTGTGCTTAATTTAAATTAGTAATAGAGGCCAGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGATGCCAAAGTGGGCAGATCACCTGAGGTTGGGAGTTCAAGACCAGCCTGACCAACATGGAGAAACTCCGTTTTTACTTAAAAAAAAAATTACAAAATTAGGCAGGCATGGTGGCGCATTCCTGTAATCCCAGCTACTTGGGGGTCTGAGGCAGGAGAATCGCTTGAACTCGGGAGGAGGAGGTTGCAGTCAGCTGAGATTGCGCCAACGCACTCCATCCTGGGCAACAAGAGTGAAACTCCAAAAATAAATAAATAAAAATAAATTAGTTATAGGCAGATTGACATTCTTTGGTTTTTGAAATATGTAAACTTCTGGGTTTTTTATTTTTATTTTTTTAGACAAAGTCTTGTTCTGTCACCCAGGCTGAAGTGCAGTGGTGCAATCTCGGCTCATTTCAACCTCCACCTCCCAGGTTCAAGCAATTCTCTGCCTCAGTCTCCCGAGTAGCTGGGATTACAGGTGCCCGCCACCACGCCCAGCTTGTTTCTGTATTTTTAGTAGAGATGCGGTTTCACAATCTTGGCCAGGCTGGTCTTGAACTCCTGACCTTGTAATTCACCCGCCTTGGTGTCCCAAAAATGCTGGGATTACAGGTGTGAGCCACCGCAGCAGCCTTAAACTTCTGGATTTTTAAATAATGGGAAAATAAGTTCAGAATTTTCTTCTAAATGTAATTTGACTTTTTCCTCCTCAG
Seq C2 exon
CTGATGTAAGCAATGGTACAGTAAAGAAAGAGTCTTCTAATAAAGAAGGAGCTAGAATGTGGATAAACGACATGAAGATGAGGAGTTTTTCCCCAACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139697:ENST00000267176:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=NA C2=0.755
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains