BtaINT0128844 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020780 | SBNO2
Description
Bos taurus strawberry notch homolog 2 (Drosophila) (SBNO2), mRNA. [Source:RefSeq mRNA;Acc:NM_001077911]
Coordinates
chr7:45214808-45215690:-
Coord C1 exon
chr7:45215593-45215690
Coord A exon
chr7:45214891-45215592
Coord C2 exon
chr7:45214808-45214890
Length
702 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
3' ss Seq
ACTCTGTGTCTCACTTTCAGAGG
3' ss Score
10.82
Exon sequences
Seq C1 exon
TGTGTGGTCATCGGGCTGCAGTCTACAGGTGAGGCGCGGACCCGGGAGGTGCTGGGCGAGAAGGAGGGACAGCTCGATGGCTTCGTGTCCGCTGCCGA
Seq A exon
GTGAGTGACACATTAGGGCCCTTTCCCTGTGTGACCAACCCTGGGGCCTGGCCCTGCCTGTGACCCCAGCCGAAGGAGCCGACTCCGACCCTCAGAGACCTTAGGTCCAGCCCAGGTTATTAAGCCAGAAGGGGTAACCATGGGGACCTAGGACTCGGTGGGCACCAGCCCAGGGTCCTGAGACTTTTATCGAATGAGGTTTTCCCAGCCTTGCCCCCTGCATGCGTACTGGGCTGATTCAAGGACTGCACAGATTTTAGGGACTGTCCCTGGTGGTTCTTAAAGCCCCTGGCCTCCCTTCTCACCCTGGATGAGGATCCCAGCACAAGGCCCCTTGTCCGCTCTGCCTCATCCCGTCTCTTCCCACATGGTCCAGCATGTCCTTCCTTCCCCTGGGCCCCCCACCCTGGGATGCCCCCCTTCTACTTCAGAGCCATCAGCACTTGCAGGCAGAGCCCCACCCAGCCCCCCACCTATATTTCATCCATTGCCCACCATGTGTGGGTAGGACCCCAGTGGGACCCCTGCCCCGTCCCTGCAGCTCCTTCCCTCTCTTACCCATCTTCTCTGAGCCCCTGTGCCCAGACCCACCCTTTGGGGCCCCTTGGTGCTAGGTGTCCACTCTGCAGAGTAGCCCTTAACACATGGGACCCAACCCCTCCATGTCTCCCAGTGAAAACAAACTCTGTGTCTCACTTTCAG
Seq C2 exon
AGGCGTCTTTTTGTCGCTAATTCAGAAGCACTTTCCTTCGACCAAGAGAAGGCGAGAGAGAGGAGCAGGCAGTAAGAGAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020780:ENSBTAT00000027693:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.483
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]