GgaINT0145730 @ galGal4
Intron Retention
Gene
ENSGALG00000002672 | SBNO2
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr28:2868839-2871411:-
Coord C1 exon
chr28:2871314-2871411
Coord A exon
chr28:2868922-2871313
Coord C2 exon
chr28:2868839-2868921
Length
2392 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
ATTTTGCATCTTACTTTCAGAGG
3' ss Score
7.5
Exon sequences
Seq C1 exon
TGCATCGTCATCGGCCTGCAGTCCACTGGGGAGGCACGCACCCGAGAAGTCCTGGATGAGAATGATGGGCATCTCAACTGTTTTGTTTCTGCTGCAGA
Seq A exon
GTGAGTTAAAAATCCTTGCTTTTCTTTCTGTGGAGGGGATGCATGGGAGGCTGGAGGCATTCAAGAGAAAGCCCTGCCCTGGGGCCACTTAGAACATGCAGTTCCACAAATTCAGTCTCATAAGGGCCTCACCTTACATGAGATGTAAATGGAGAGGACTCTTTGTTGTGTTCTTGAGGTGCTGTTTCTTTAGTGTGACTTTGAGGCAGGTCCTGGATTGTTAAGGTCTCCTGTGGTCCAAACTTACATGAACAGCCTCATCTGTCTGCACACAGAAAAGAACCAGCAGGTATAAGGAGGGTCAGAAACATGGGCTCAGGTCTGGTCTGTGGGAGTCTGACTCAGGAAAACAGCACTGTTGACAGTGTAGAAACAAGAGAGGGAATCTCATGTCATGGCAGAGGCTGGGATGGTGACATAGGGCAGCATTGCTGGAGCAGTGGGAGGGGGCAGAGACCCAAGGAGTTCAGGTCCTGTGTTGCTGGTTTTCAGGACAAGCACAAGGCAGGAGAGGTGGTGGGGTTCTACAGTTTTTCCCAGCTGAGGAGAGGTGGGAGTGAAGGCAGCACAGCAGCAAGATTCATGCTGTCTTTCTGGCAGAAATTGAGGCTTGCTCTCCCTCGTTTTGGCACCTCTCACATTGTCAGCCTGTCCCCTGGCGCTGCTCCTATACAGTGAGGTGATGAATTGAGTTGTGTGTCTTCTGCAGGCAGCAGAGCTATTGCTGTTGTCTTTTGAAATGGGTTTTAATGCAGGTGAAAGCAATGAGTGATGCCATGGACAGTGCATGTCCAGTTCAGACCGAGCTGCCTCCCTTCCTATGGGAGGCTCTGTGTTAGCCTGTGTCAGTCTCTGCTGTCTCCAGTCCACCCCTGAAATACAAATACAACTTAGGGACGGCGTGTAAGGCAAATCTTTCAACTGCTTGAATCCATTTGGTCTCTTGAACTGATTTCTGCATTTCCAAATGCAGAGGAACTCGGTGAGAGAACGATGTGGTCCCTTTGAGCCTCTCTCAGCTTTCCAAAGAGAAGAGCTCTGTTACTCATCACGCGCACTGCTCAGCTCTGTCCCTGCTTTCATGGGCAGGAGCAGTTGGCTCAGCAGCATTGCTCAGATAACTGGATGTCCTCTGGCATCCGCGGAGCGTCTAATTGCAGCGTCCTGGTTTTACAGCACTTCAGGGGATTTCTCGAGGGGAGTGTGCTGGGAAGAAGCAGTTACTTAAAAGATGCCGAGAAACAGAGTTAAAAGTGAGCTGATTGCTCAGTGAGTGAATACCAGCCCAGCCCTTTGTTCGCAGGGAAAGCGGGGGAGGGAAATGAGCAAGGTCAGTGAGTGGCAGAGAGGCTTCAGACCTGAGAGTGAGCTTTGCATTGTGTCCCACAGCTCACGTCAGCACACGAGGCAGAAGGGCCATGCCTGGTGCCATGTCACTGCAGTCCCTCAGCAGCCAGCCCAGGGCTCTGCCCCTTCAGGGAGCAGGGCTGTGTCCTTCCGCCCCTCACACTGAGGGTCTTACAGCCCTTTCCCAGTTCCCAGCACAGCCTCTTTCTCCCACAGGCGAGTTGTCATGTCCACACCTCTCGGCTTTTGCTTTCAACATATTTTTTTTCAACCAGAGCTCATTCAGCACTGCCTTCTCATTGCACTAGGGGTTCATCCCTGTCCGACATGATCAGCGTTTAAGCATTTGCTCTTTTGTTTGCGGGGCAGACCACAGAAACATTTAATTCCCACACCTTCTGATTGCCCCATTCACCTGAAACCACCACTTTCCCCACGTTTTTGTCACTTCCCTCTATTCTGTGGGCAAGCAGGCCCATGTCCAGTTAACCAAAGGACTTGGTGGAGTGCATTTGTTGGACAGCCCGACAGTGGTCTCTGCTGTCAGAACACAGAGAGGGACTGGGACTGGCTGCATTTTTTACCAGTGATGTAACAGCTTCCCAGGATCGTGTTTCCTGTTTCAAACTCCCTCCTAGTTGCTGTATAAAGGTCTCAGAACTTTGGCATGCCACATGGCAGCACGGAACCCAGGGTCTGCTCTGCTTTTGTCACTGCATCCCCAGGGGTGGCAGGAAGGCTGCAGCAGAGCATTCCCAGCACTGAGTGCACAGCCTGCCCTCAGCACGCCTGTCCCACAGCTGGGGATCTGCTGTGCGCACTGCGCTCCCATGGCTGAGTTGTGTGTCTCCCGCAGAGCCCTTTGGTGCAACTCACTCTGTCTGGAGAGCCACGCCATAGCAGTGGCTGGCTGACCACACGCTGTAGTCGTGATGCTGGATTTACCCCTCTTAGATGAAATGTGCTGCTGTGTCAGATACACGTTGCTACGTGATGACCAGCAATGTTCCTGGTGGCTAGAATAAATTTTGCATCTTACTTTCAG
Seq C2 exon
AGGCGTCTTTCTATCACTAATTCAGAAGCACTTTCCTTCAACCAAAAGAAAGAGAGAAAAAGGAACTGGCATTAAAAGAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002672:ENSGALT00000004211:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.414
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]