GgaEX0003384 @ galGal4
Exon Skipping
Gene
ENSGALG00000002672 | SBNO2
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr28:2867639-2871411:-
Coord C1 exon
chr28:2871314-2871411
Coord A exon
chr28:2868839-2868921
Coord C2 exon
chr28:2867639-2867839
Length
83 bp
Sequences
Splice sites
3' ss Seq
ATTTTGCATCTTACTTTCAGAGG
3' ss Score
7.5
5' ss Seq
AACGTAAGA
5' ss Score
7.69
Exon sequences
Seq C1 exon
TGCATCGTCATCGGCCTGCAGTCCACTGGGGAGGCACGCACCCGAGAAGTCCTGGATGAGAATGATGGGCATCTCAACTGTTTTGTTTCTGCTGCAGA
Seq A exon
AGGCGTCTTTCTATCACTAATTCAGAAGCACTTTCCTTCAACCAAAAGAAAGAGAGAAAAAGGAACTGGCATTAAAAGAAAAC
Seq C2 exon
GCAAGCAGAGGGGCCGCTGCGCCAAGACTCTGAAGGGCATGTGTGACCCCGTGGGGGTGATCAAGATCAGCGATGACAGCAGCACCGACTCCGACATGGGGCTCGACAGTGACTTCAACTCCTCCCCAGAGTCTGTGCTTGAGAATGACGATGTCATCTTCATTGAGCACGCCTTCAATGGCTTTGTGACTGAGAGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002672_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.414 C2=0.206
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGAGAAGTCCTGGATGAG
R:
GTTGAAGTCACTGTCGAGCCC
Band lengths:
178-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]