HsaEX6091494 @ hg19
Exon Skipping
Gene
ENSG00000064932 | SBNO2
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:29158]
Coordinates
chr19:1114230-1116925:-
Coord C1 exon
chr19:1116828-1116925
Coord A exon
chr19:1116020-1116102
Coord C2 exon
chr19:1114230-1114421
Length
83 bp
Sequences
Splice sites
3' ss Seq
ACTCCGCGTCTCACTTTCAGAGG
3' ss Score
9.6
5' ss Seq
AACGTAAGC
5' ss Score
7.35
Exon sequences
Seq C1 exon
TGCGTGGTCATCGGGCTGCAGTCCACGGGCGAGGCGCGCACGCGGGAGGTGCTGGGGGAGAACGATGGGCACCTCAACTGCTTCGTCTCGGCCGCTGA
Seq A exon
AGGCGTGTTCCTGTCGCTAATTCAGAAGCACTTTCCGTCCACCAAGAGAAAGCGGGACAGAGGAGCGGGCAGCAAGCGGAAAC
Seq C2 exon
GGCGACCTCGGGGACGCGGGGCCAAAGCCCCCCGGCTGGCGTGCGAGACAGCGGGCGTCATCCGCATCAGTGACGACAGCAGCACGGAGTCGGACCCTGGCCTGGACAGCGACTTCAACTCCTCCCCCGAGTCCCTGGTGGATGACGACGTTGTCATCGTTGATGCAGTCGGGCTCCCCAGTGACGACCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064932-'23-25,'23-23,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.455 C2=0.450
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCAACTGCTTCGTCTCG
R:
CAACGTCGTCATCCACCAGG
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)