RnoEX0078210 @ rn6
Exon Skipping
Gene
ENSRNOG00000013987 | Sbno2
Description
strawberry notch homolog 2 [Source:RGD Symbol;Acc:1307194]
Coordinates
chr7:12509026-12510704:+
Coord C1 exon
chr7:12509026-12509123
Coord A exon
chr7:12509538-12509617
Coord C2 exon
chr7:12510513-12510704
Length
80 bp
Sequences
Splice sites
3' ss Seq
GAGCCCTCTCTCCCTTGCAGAGG
3' ss Score
9.57
5' ss Seq
AACGTAAAT
5' ss Score
0.44
Exon sequences
Seq C1 exon
TGCGTGGTCATCGGGCTGCAGTCCACAGGGGAGGCGCGGACCCGAGAGGTGCTAGACGAGAATGAGGGCCGCCTGGACTGCTTCGTCTCTGCAGCAGA
Seq A exon
AGGCGTCTTCCTGTCCCTGATCCAGAAGCACTTCCCTTCCACCAGGAGGAGGCGTGACCGGGGAGGAGGAAAGAGGAAAC
Seq C2 exon
GGCGGCCTCGGGGTCGTGGTCCCAAGGCTTCCAGACTGACACTGGAGGCAGCAGGAGTTATCCGTATTAGTGATGGCAGCAGCACAGAGTCAGATGCTGGCCTGGATAGCGACTTCAATTCATCCCCAGAGTCCCTGGTAGATGATGATGTGGTCATCGTAGACGCCCCCACGCTCCCCACAGATGACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013987-'28-31,'28-29,29-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.464 C2=0.523
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTAGACGAGAATGAGGGC
R:
TTGAAGTCGCTATCCAGGCCA
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]