DreEX6098663 @ danRer10
Exon Skipping
Gene
ENSDARG00000016188 | SBNO2 (1 of 2)
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr22:17676258-17677069:-
Coord C1 exon
chr22:17676972-17677069
Coord A exon
chr22:17676526-17676608
Coord C2 exon
chr22:17676258-17676440
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTGTGTGCTCCTCAGGGG
3' ss Score
9.69
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
TGTGTCGTAATAGGGCTTCAGTCAACAGGTGAGGCTCGAACCAGAGAAGTCCTCGACGAAAACGATGGACACTTGGATCGATTTGTGTCTGCTGCTGA
Seq A exon
GGGTGTTTTTCAGTCTCTGGTCTTCAAACACTTTCCGTCAGAGAAGCAGATGAGAGAAAAAGGAGCGGGGAATAAGAGGAAAC
Seq C2 exon
GTAAGCCACGGGCCAGGCAATCAAAGCAACCGCGACAAGGCACCGACATAGCAGTGATCAACATCAGTGATGACAGCAGCACTGAGTCAGACGTAATGGACAGCGACTCCAACTCTTCACCTGACTCAATTCAGGACAATAACGATGATGTCATCTTCGTTGATCAAACCAGCTATCAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016188-'18-17,'18-16,19-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.414 C2=0.823
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCAGTCAACAGGTGAGG
R:
GTCTGACTCAGTGCTGCTGTC
Band lengths:
177-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]