MmuEX0041089 @ mm10
Exon Skipping
Gene
ENSMUSG00000035673 | Sbno2
Description
strawberry notch homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2448490]
Coordinates
chr10:80062568-80064242:-
Coord C1 exon
chr10:80064145-80064242
Coord A exon
chr10:80063649-80063728
Coord C2 exon
chr10:80062568-80062759
Length
80 bp
Sequences
Splice sites
3' ss Seq
GAGCCCTCTCTCCCTTGCAGAGG
3' ss Score
9.57
5' ss Seq
AACGTAAAT
5' ss Score
0.44
Exon sequences
Seq C1 exon
TGTGTGGTCATCGGGCTGCAGTCCACAGGGGAGGCACGGACTCGAGAGGTGCTGGATGAGAACGAGGGCCGCCTGGACTGCTTCGTCTCCGCAGCAGA
Seq A exon
AGGTGTCTTCCTGTCCCTGATCCAGAAGCACTTCCCTTCCACCAGGCGGAGGCGTGACCGCGGAGGAGGAAAGAGGAAAC
Seq C2 exon
GGCGGCCTCGGGGTCGTGGCCCCAAGGCTTCCAGACTGTCACTGGAGGCAGCAGGAGTTATCCGTATTAGTGATGGCAGCAGCACAGAGTCAGATGCTGGCCTGGATAGCGACTTCAATTCATCCCCAGAATCCCTGGTAGACGATGATGTGGTCATTGTAGACGCCCCCACACACCCCACAGATGACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035673_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.464 C2=0.588
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAGAGGTGCTGGATGAGA
R:
TTGAAGTCGCTATCCAGGCCA
Band lengths:
176-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types