BtaEX0031437 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020780 | SBNO2
Description
Bos taurus strawberry notch homolog 2 (Drosophila) (SBNO2), mRNA. [Source:RefSeq mRNA;Acc:NM_001077911]
Coordinates
chr7:45213772-45215690:-
Coord C1 exon
chr7:45215593-45215690
Coord A exon
chr7:45214808-45214890
Coord C2 exon
chr7:45213772-45213963
Length
83 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTGTCTCACTTTCAGAGG
3' ss Score
10.82
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGTGTGGTCATCGGGCTGCAGTCTACAGGTGAGGCGCGGACCCGGGAGGTGCTGGGCGAGAAGGAGGGACAGCTCGATGGCTTCGTGTCCGCTGCCGA
Seq A exon
AGGCGTCTTTTTGTCGCTAATTCAGAAGCACTTTCCTTCGACCAAGAGAAGGCGAGAGAGAGGAGCAGGCAGTAAGAGAAAGC
Seq C2 exon
GGCGGCCACGGGGCCGTGGGGCCAAGGCACCCAGGCTGGTGTATGAGGCAGCAGGTGTGATCCGCATTAGTGACGACAGCAGCACAGAGTCGGACGGTGGCCTGGACAGTGACTTCCACTCCTCCCCCGAGTCCCTGTTGGACGACGATGTGGTCATCGTGGATGCCATCGGGCTCCCAGCCGATGACCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020780-'24-29,'24-28,25-29
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.483 C2=0.431
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCGGGCTGCAGTCTACAG
R:
GCTGTCGTCACTAATGCGGAT
Band lengths:
171-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development