BtaINT0129702 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012966 | SCRN3
Description
secernin 3 [Source:HGNC Symbol;Acc:HGNC:30382]
Coordinates
chr2:22426719-22429671:-
Coord C1 exon
chr2:22429502-22429671
Coord A exon
chr2:22426901-22429501
Coord C2 exon
chr2:22426719-22426900
Length
2601 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TGCTATGACTTTCTTTACAGTGT
3' ss Score
8.38
Exon sequences
Seq C1 exon
TTAAAAAAAAAATGGAACCTTGTTCCTGTGACACTTTCGTGGCATTACCTCCAGCAACAATTGATAACAGGATTATTTTTGGGAAAAATTCAGATAGACCCTGTGATGAAGTACAAGAAGTCGTTTATTTTCCTGCTGCAGTTCATGACAACCTGAAGGAACATCTTAAG
Seq A exon
GTAGGTGAAATGCATGTTTTGTTAACAATATTTTTCTTTAAAAATGTCAAAAACAGTGTTTAAAAATCATTAGTTAGCTATCTGGCAGAGGCTATAGAAGTTAAAAAATTAAAGAATTTAAATTTCATAAATAATTTGAATCAGAACTAGAATTCTGGTCTTTTAGCGATTTGTAGAAAGCTAAAATAATTATTATTAGTTCTTTGAGCAAATATTTGAATGCTTACTATATGCAAGCATGTTGAATAGGAGAAAGAGTTAAAGCTTGCTGTCAAGACTGGTTTTGTCTTGCTTTTAACAGTTCCCTACCTTAACAACAGGTTTCCCAGGTGGCTGGGTGGCAAAGAATCCGCCTGCCAAATAGGAAACTGGGGCTGAATTTCCTGGGTTGGGAAGATCCCCTGGAGAGGGAAATGGTAACCCACTCTAGTATCTTGCCTGGAAAATCCCATGGACAGAGGAGACTGGTGGGCTATAGTCTGTGGGGTCACAAGAGTCAGACAGGACTTAGGAACTAAACAACAATCACTCTTAACAAGAGGTGTGAGATCTCATATTAAGATGTGTGAATGTGGACTTCCTTGGTGGTCCAGTTACTAAGAATCCGCCTGCCAATGCAGGGAACATGGATTCAATCCCTAGGCCCAGGAAGATTTCACCTGCTGCGGGCCAGCTGCACCCTAGTGCCACAACTATTAAACACCACAGCAAGAGAAGCCACCTCAACGAGAAGCCTGCACACTACAGCTCGAGTAGCTCCTGCTGGCCACAACTCGAGAAAGCGTGGGTGCATCAACAAAGACCCGGCTCAGCCAAAAGTAATAATAATAAAATATCTGAAAGCTTCAAGAATGCTGTGGTTAACACCATTTTAGAGCTCATGAAATTAAGACCCTTGGAATGGCTATGGAGGAAGATCCTAAATTGCAAAGATTTGTTGTTGCCAGCTTTCAACTTAAGTCAATTAGTTATTAATGTCAACCTGTCATAAAAATGCCAGCATGTTGCATCTGGCTAAATGAGGGGAGAAAAGATTTTATTTGCCTTGTTTACCCACCCTGCCCTGTAATGCCTATAATCATGAAGATGGAATAAATTGTAACATTTAGTTTCTATCATTAAAAAAAAAAAAGACTAGTTTTGTCTTTCAGGAGCTTAGAGTCTAGTAGAGGAATAGGATGTGTATGTAACTAACTACCTTGTAAAGAAGGATGAAGTTTCAACACCAGATTTAAGAGCAGCAATTTGTGACAGCAGTGGGGAAGAAGCAATTAATTCAGACTAGGAATCAAAGAAGGCTTCACCAGAAGTTGGGGTTTCAGCTGGAATTTGATGGGCAAAAAGGATTCTGATTGGTGTAGAATAGGAACAGTCATTCCAGGCTCTGGAAATGGCAGTTTTATCATCAGAAGAGGTTTTTTGATCCAGTGGTAACTGTCAATACTATGCACTAGTCATTTGATAGTATACACGTCAATTAAAGGATACTTTAAAAATTTTTTATTTAAAAAATCCATTTAGCATGGAATTTAAAGGGAAAATTTCACACTATGCTTTTATTGCTAAATTGTTTATTTTTAGATTCCATTTTTACTGATATTCTAGTACCAAGATATATTAAATATGTTTTATGTATTAGTTGTTCCTCCACATCCTTGGGGGATTGGTTCCAGGACCCCCTAGGATATCAAAATCATCTGATGCTCAAGTCCCTTATTATAAAATGACATATACATGCATATAATCTATGTACATCCTCTCATAAACTTTAAATTATTTCTAGGTAGTACAATATGTATGGCATGTAAATAGTTGTAAATGTAATATAAATGCTATGTAAATAGTTTACAGCAAGTGGCAAATTTATTTTGCTTTTTGGAACTTTTTGGAATATTTTTTTTGCTGAATATTTTTGATGAGTGTTTAGTTGACTGTGTGGATATGAAACCTGTGGATATGGAGGGCTAATTGTACTAGGCCAGTGTTTTGTTTTGATGAGACTATTTATTCATCGTGGATCCATTTCTATTTTATCTCTTCATATTTGTCTCACCTATCCTGTAAGCCAGTAGTTCTTGTTCTTTTCACTATTGTGGATGTACCTGATGGGCGAATCCCACATGTGACATGGGCTTCTATGGCAATCACTTGTAGTTGAAGGCTGCCATATGGAATGTGTATCATGAATCCACATACATCTTCCTTTACAATATGTTTCAATATTTCACAACTAGAAACTTGCTTTCTCCTGAGCTTCTATTAGCGCCCCATCTTCACTTTTCTTCATAGTCCTTATACTTTGCATTTCCTTGTGTCTTAGTAATGTACAGGTCTTAGTTTCTTGAAAGCAAGATCTGTGTCTGATTCATCGTTATAACTAATATATATCTTAGCAGACAGGAGATGCTTCACATATCTGAGTGAATAAATGCTCTTAGGGACAATTCTGAATATTTTTTAAGGGTAATGCCTTATAATTGGAAATTTCAATTTAGTTATAATCTCTTTCGTAATAGTCAGGTCTTTGATCGATTTTAAGATTCTAGACTTGGGTAACTTTCTTTTTCAGTTTTATTGTTGTTGCTATGACTTTCTTTACAG
Seq C2 exon
TGTACTTACATAGAAATTGATCAAGTTCCTGAAACATACGCCGTTGTCCTTAGTCGCCCAGCTTGGTTATGGGGAGCAGAAATGGGAGCCAATGAGCATGGAGTTTGCATTGGGAATGAAGCTGTATGGGGAAGAGAAAAAGTTTGTGATGAAGAGGCACTACTGGGCATGGACCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012966:ENSBTAT00000017239:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(18.0=90.6)
A:
NA
C2:
PF0357710=Peptidase_C69=PU(26.6=93.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]