DreINT0131724 @ danRer10
Intron Retention
Gene
ENSDARG00000016611 | scrn3
Description
secernin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-4783]
Coordinates
chr9:2519066-2522238:-
Coord C1 exon
chr9:2522078-2522238
Coord A exon
chr9:2519248-2522077
Coord C2 exon
chr9:2519066-2519247
Length
2830 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTG
5' ss Score
7.44
3' ss Seq
TTATTTCTCCATCTGTTCAGTGC
3' ss Score
7.55
Exon sequences
Seq C1 exon
ATTTCAGGATGTACCCAAGGTCTTGTGACACATTTGTAGCCTTGCCGCCGTCCACTGAGGGTCAGCGGATAATCTTCGGGAAGAACTCGGACAGACCCTGCGATGAGGTTCAGGAGGTGGTCTACTTCCCTGCAAAGGAACATGAACCAGGAAAAGTTGAG
Seq A exon
GTATTGATCATCAAAAATGAAAGATGTCAAACACAAAATAACATAATCATTATTGGTTTTTATTAGCAGTCAGTTTGGGGCAGGGGCGGACTGGGACTAAAAATCAGCCCTGGCACTGTAGCCACACCAGCCCACATTACCACACCGACACAGCCCCACCCAAGGACACGCACATTCACTACTTATGTTGGTGTACAGATGGTAAAATTATACAAGCAGTACCATATTTAAGAGATATTTAAACATTTAATGTGTATGACTGGAACAAAAACAACCCATTTATATATGCAATCATGTCATTACTTTTCTTTTCGGCTTAGTCCCTTTATTAACCTGGGAATCGGCAACTTATCCAGCATATGATTTACACAGTGGATGCCCTCAAAGCTGCAACCCATTACTGGGTTATCCAATTCCCAATTGGCCTACCCAATTCACCTACAGCATGTGTTTGGACTTGTGAAGGAAACCAGAAGGAAACCCACGCGAACATGCAAACTCCACACAGAAACACCAACTGACCCAGATAAGGCTCAAACCAGTGACTTTCTTGCTGTGAGGTGACAGCACTACCTACTGCGCCACTGCACTGCCCCCTTTCGAGACTAGTTCAGTAATTTTATGTATTTGGCAATGACTGGCTTGACTGCCTTTCCCTTTTTATGGTCCATCTCTGTCAATTAGCTTGTGTTGCACTTACTGTTTGTTTGACATTCTTGCAAGATTTTGATTACGTCTGCGTAACCTCAGATTGGGTCGGCCCATCTTGAAACCAGCCGGTTGTTGCCGATTGGGCCAATGCTTAACATTGACTATTATTCTTACTATTATCACCATCATCATCATCATAATATTCACATCTCGCACGAGATAAAAGCTGAATGCATTTAAAAAACAATACATATGAAAAAATAAAATAAAAATAGCTGACCGGCCCACATTTAAAAAATGGTCCGGCCCTTCTGGCATTTGCCAGATGGCCAGTCCGCCCCTGGTTTGGGGGAAAATATCTTATAATTATCAGTTAAAAACTGAACTTTTCAGTTAAAAACTTTTTTTCTGCAAACTATTTTTGTGTAATAATAATAATAATAATTCCTAACATTTATATAGCGCTTTTCTGGGCACTCAATTCGCTTCACACAATGTGGGGAATCTTCTCATCCACCACTAGTGTGCAGCATCAACCCGGGCAGCCATTTTGCCCCAGACCGAACACCACACATGATTGGTGGAGAGGAGACAGAGTAATGAAGCCAGTTACGATATGGGGAGGGTTAGGGGGCCATGATGGACCGAGGCCAGTGGGCAGATTTGGCCAGGATGCCGGGGTTAAACCTCTACTCTTTTTCGAAGGACATCCTGGGATTTTTAACGACCACAGAGAGTCGGGACCTCAGTTTAACGTCTCATCTGAAAGACGGAAGCGTGTAAACAACGCTACTTCGGAAATCTATGATGAATAGAATTTTAAATTAACTCTGTATTTTGAATATGAATTAAATGTTTGTATTCTGTGCTCCATGTTTTTCTTAGTTTCCATAGTTACTCATTAGTTTACTGATTATGTCTACCTGTTCCTTGTTTAGTCCCCTGTTATCTCAACTTTTAATCATTCATTCATTCATTCATTCATTTTTTTTTCGGCTTAGTCCGTTTATTAATCTAGGGTTGCCACAGCGGAATGAACCACCAACTTATCCAGCATATGTTTTATGCAGCAGATGCCCTTCCAGCTGCAACCCATCACTGGGAAACCCATACACACTCACTCACACACACACACACTACGCACAGTTTTTAGCCTACCCAATTCACCTGTACCACATGTATTTGGACTTGTGGGGGAAACCGCAGCACCTGGGGGAAATCCACGTGAAAGCGGGGAGAACATGCAAACTTTACACAGAAATGCCAACTGACCCAGCCAAGCTTCTTTGCTGTGAGGCGACAGCACTACCTACTGCTCCAGCGCATCACGCTATAACTTTTAATTAATCAGGGATAAGATTATATAATTATGCAAACTATTTGTCCCCAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTAAGGCCAGAATTATTAGCCCCCCTCTTTATTTTTTCTTCTAATTTCTGTTTACAGATTTCTTCAACACATTTGTAATCATAATAGTTTTAATAACTCACTTTTTAATAGCTGATTTATTTTATCTTTGCCATGATGACAGTAAATAATATTTGACTAGATATTCTTCAAGACACTTCTATACAGCTTAAAGTGACTTTTAAAGGCTGAACTAGGTTAATTAGGTTAACTAGGCAGGTTAGGGGAATTAGGCAAGTTATTGTATAACGATGGTTTGTTCTGTAGACTATCGAAAATAATACAGCTTAAAGGGGCTAATAATATTTTCCCAAAAATGTTTTTAAAAAAATTAAAAACTGCTTTTATTCTAGCCGAAATAAATCAAATAAGACTTTCTCCAGAAGAAAAAATATTATCAGACATACTGTGAAAATTTTCTGAATCTGTTAAACATCATTTGGGAAATATTTAAAAAAGAAAAGAAATTGAAAGTGGGGCTAATAATTGACTTCAACTGTATATATAAAAACTCTGTTTCAACGCTGACGATAATAAAAAAAAAATCATATAAAATCAGCATTTCTGAAAGATAACGAAGACTGAAGTACTGATGTTGGAAACGCTCAGCTGTGCTTTGTGTGTTTCGAAGTGTATTAACAGTGTCTGGAATTGTGTTGTTATTTCTCCATCTGTTCAG
Seq C2 exon
TGCACGTATATAGAAATCGAGCAGGTGGAAAAGACGTTTGCAGTGGTGCTGAGTCGCCCCGCCTGGCTGTGGGGGGCAGAGATGGGGGCAAATGAGCATCAGGTGTGCATTGGGAACGAGGCAGTGTGGGGCAGAGAGAGCGCGGATGGTGACGAGGCACTTCTGGGCATGGATCTTGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016611:ENSDART00000016710:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0357710=Peptidase_C69=PU(26.3=98.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]