BtaINT0129747 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020573 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr15:44125124-44125776:+
Coord C1 exon
chr15:44125124-44125246
Coord A exon
chr15:44125247-44125659
Coord C2 exon
chr15:44125660-44125776
Length
413 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CTGCATTTTGTCCTGTCTAGAAG
3' ss Score
7.11
Exon sequences
Seq C1 exon
ACACCAACGAGTGCAGCGTCAACAACGGAGGCTGTCAGCAGGTCTGTGTGAACACTGTGGGCAGCTACGAATGCCACTGCCACTCTGGGTACAAGCTCCACTGGAATAAAAAGGACTGTGTGG
Seq A exon
GTAAGAGTCCCTGCGGCTCAGGCTCAGCGCAGCCCAGCAGTTCTCGCCACGCCCCCCTGGACCCGGCGTGTGCCGGCCAGTCCTCGACTGAACTCTCCTGCCCTCAGCTGCAGCAGCCCATCTTTAAATAGTTCAAAAACAGGAGATACTTTGCAGGCTCTTTGGTGTTTCCTTCTGTGCTTCAGCGTAGGTTGGAACTCACTTCTGTTTGCTTTTCCATATGAAAAGAATAGTAAACCAGACGCTCCTTTACCCTGGGCGGGTGGTGGGGAATAAGCGAGTGTCTGTGTTTTGGGCTGGGCATCAGCGCTGCCTTCTTCGCTCGGGTCTTTGGTGTGTGGGAGTCAGCTGGCCTGGTCTCACCAGGAAGTGTCCTTCTCTCTCTGTAAGTGTCTGCATTTTGTCCTGTCTAG
Seq C2 exon
AAGTGAAGGGGGGCCTGCCCACTAGCCTGTCACCCCACGTGTCCCTGCAGTGCGGTAAAAGTGGTGGAGGAGACAGGTGCTTCCTCAGATGTCACTCTGGCATTCACCTCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020573:ENSBTAT00000027416:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAACGAGTGCAGCGTC
R:
TGGAGAGAGGTGAATGCCAGA
Band lengths:
238-651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development