BtaINT0129758 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020573 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr15:44157568-44158843:+
Coord C1 exon
chr15:44157568-44157647
Coord A exon
chr15:44157648-44158538
Coord C2 exon
chr15:44158539-44158843
Length
891 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AAAAATTCTGTTCTTTTTAGGAT
3' ss Score
10.05
Exon sequences
Seq C1 exon
AGGACTACCAGGAGCTCATTGAAGACATAGTTCGAGACGGCAGGCTCTATGCATCTGAGAACCATCAGGAAATACTTAAG
Seq A exon
GTGAGTATACCTAGGTGGGCATGGTAGTTACCCATGCCAAGCACCACAGAGGAAAGTTTCCTATCCCACCACGTTGCTGCCTTTCGGACATTGAGCCTGCTCTGGGCTGAGGGCAGTTTTATATCTTCACCAGACTTAGTTTCTTTAAAAAACAACAACAACAGGGAGTTGTTCTTAGTGTTGTCAAGTGTTTGTTGTGTTGTTTAGTCGCTAAGTCATGTTGGAATCTTTTGCGACCCCATGGACTGTAGCCCCACCAGGCTCCTCTGTCCATCGCATTTTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTTTCCAGGGGAGCTTCCCAACCCAGGTCTCCTGCATTGGCAGGTGGATTCTTTACCACTGAGCCACCAGGGAAGCTGTTTTTAGTGTTGTCAAGTAAAATTGTATTTTTAATCTAGAAATGTAAGGAAGAGCAGTGGGAAACTTGTTTATCATAAATCCAAGCCAGCAGCAAATCATGTTTTCATGTTTATTCTCCAAATAGTTGAAGAGTCTTGGCTCCTTGTTCATCCTTCAAGCCTGAAGTTCACCAACTTTCAGATACTTAGAAGTATAAATAAACACTTGCCACATCACTAACCCTAAAAATATTCCCCAAATTCCAAAGTTATCATGTGGTTTAGAAAAACAATTTTTTACGTATTAAGTTTTCTGTTATGAAACTAATATGTGCTTTTTAAAGATCCTTGGGGGGAAAAAAACTGGTAAAAAGGTAAAAATCAGAGGAAACAATTTTCACAAAGTGTTTTTCAGCCAATCAACTTACTGTCTCACAGTGGGACATCATAGTTCCCTTGGCAAAATGTCATCATGTTTAAATATTTTGGCCCAGTAACAAAAATTCTGTTCTTTTTAG
Seq C2 exon
GATAAGAAACTGATCAAGGCCCTGTTTGATGTCCTGGCCCACCCCCAGAACTATTTCAAGTACACAGCCCAGGAGTCCCGCGAAATGTTTCCACGATCCTTCATCCGATTGCTCCGTTCCAAAGTGTCCAGGTTTTTGAGGCCTTACAAATAAGACTGCCCACGTGCCACTTGACACAGTGTTCGGCCTGTGGGCTGGCAGGACATGGCCATCTGCTTCTGCAGCCAGCATAGATGGATAACGCTGCCTCTAGTAGCAGTGACTGGTTAGAGTTCAATTTTTATAGATAATACAGGTATTTTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020573:ENSBTAT00000027416:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTACCAGGAGCTCATTGA
R:
CCAGTCACTGCTACTAGAGGCA
Band lengths:
346-1237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development