BtaINT0129762 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020573 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr15:44113390-44114305:+
Coord C1 exon
chr15:44113390-44113506
Coord A exon
chr15:44113507-44114215
Coord C2 exon
chr15:44114216-44114305
Length
709 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAAT
5' ss Score
4.16
3' ss Seq
GCTCTTTGCGTCTCTTGCAGAGC
3' ss Score
10.45
Exon sequences
Seq C1 exon
TGACCTGTAACCATGGAAACGGTGGATGCCAGCACTCCTGTGAAGACACCGCTGAAGGCCCAGAGTGTAGCTGCCATCCTCGGTACAAGATGCACTCGGATGGGAGGAGCTGCCTCG
Seq A exon
GTGAATGGTGACCCCAATGCTGGGTTAGGGTCTTCCCCAGCCTGCTCGCCACTAACCCAACCCTTACCCAAACCCTAACTATTAATAGTGTTTAGAACCAGAGGTAGGGTGTTGCCAGTGCACTTGCCCTCAAGCGGGTTCCATGCTGCTTCACATGGGGCAGGGGCAGTATTCCAGACCTGGAATGGGGGCCCTTTTCTCCCTGTGAGAACTTGGAGAGCCCTTGTTCCTTTCCTGGACTAGGCTGCTCCCGGAGCTGATATTCTGGAGATTGGTCACCTCCCAAGAGAGCTGTTCATGATGACAGGGTGGCCTTTGCCGTCAGCAGAAGCCAGAGTTGCATGCTTATGGCTGGATGCCTGCCCTGTCCATCGTGATGTGTCCTTTGCTAGCTCAATTTTAGAGGTTCCCTGATCCAAGATTCTTTTTGTCCTGAACTAGGGGTTCTGAAGTGAATCTGAAGCTTGCATTCCCCAGGGTCTGTGGTCAGTACAATATAATAAAAAAAAAAACTCTTTCCCGTATTTAATGTCTATTAAGGCTCTGTGGCCATGTAACACAGAGCCTCATTGCAACATGTTTTTTTTGAGCAAAGAGTCACATTTCTCACATTGTTCTCGTGTCTGGGATTTCCAAGGAAGTGGTTGTGCTGGGGATGAACAATCTGACTCATTCAGTCTGAGAACTGTGCTCTTTGCGTCTCTTGCAG
Seq C2 exon
AGCGAGAGGACATTGCCCTGGAGGTGATGGAGAGCAACACCACGTCCGTGGCAGATGGGGATAAACGGGTGAAACGGCGGCTGCTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020573:ENSBTAT00000027416:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.323
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTGTAACCATGGAAACGG
R:
CATGAGCAGCCGCCGTTTC
Band lengths:
206-915
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development