BtaINT0130610 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007307 | SELE
Description
Bos taurus selectin E (SELE), mRNA. [Source:RefSeq mRNA;Acc:NM_174181]
Coordinates
chr16:38191934-38192433:-
Coord C1 exon
chr16:38192367-38192433
Coord A exon
chr16:38192019-38192366
Coord C2 exon
chr16:38191934-38192018
Length
348 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
CCTCCCTCCCTCCCCCCCAGAAA
3' ss Score
11.47
Exon sequences
Seq C1 exon
CGTCAAACCTGCAGGAGTGGCACAACACAGAAGCAGCAGCAACACGGGAGGAATCTAATACTGAACG
Seq A exon
GTAAGTGCAAGAAATCTTTACAAGAGCAGTCTTGACCATGAAGCACAGATCATGAATATGAACAGATATGCAAAACTCCTTCCATAGAAGATCTGTGCAAGCTCTTATTGTATTCAGACTGCTTAAAACCTGGCTTTTCTTTTTGACTGAAATGATGAAAATCTTAACTTCTGTATTTATTCCTTTGGGCAAACTTCTTTGAAATAAACCTTGTGGCAAAAGATTATAATCCTTTAATCTAAACATCTTATGATGCCACTTTACACATCATTGTAGAATGATCTGGGTATCTGGTAGCCTGGGAGTTCATTCTATAATTAATTTTGTACCTCCCTCCCTCCCCCCCAG
Seq C2 exon
AAAAGCATTTTCAAGTCTAATCTTTGGATCAAAAGAACTCTTGAAGTCATGATTGTGTCACAGTATCTCTCTGCTCTCACTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007307:ENSBTAT00000009612:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development