Special

MmuINT0140912 @ mm10

Intron Retention

Gene
Description
selectin, endothelial cell [Source:MGI Symbol;Acc:MGI:98278]
Coordinates
chr1:164048234-164048743:+
Coord C1 exon
chr1:164048234-164048322
Coord A exon
chr1:164048323-164048659
Coord C2 exon
chr1:164048660-164048743
Length
337 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TCTGCACTTTCTCTCCTCAGGAA
3' ss Score
11.5
Exon sequences
Seq C1 exon
CACAGCAAAACTGCGAGAAGAACGGATAGAGAGAAGCAGGAGCAATACACCTAAGGGATCCAACGCCAGAACAACAATTCCACTGAACA
Seq A exon
GTAAGTGCGGATTCCGAACCAGAGGAGCCTTGGGCCCGAAGCATAGATTTATGTGTGCTCACATACGCAAAAAAAAAAAAAAAAAGTCATTCTGATTAAAAAAGACCTGTCTAAACTGTTATAGTGTTGTAATTAATACCTACATTTTCTCTTTGTTTAAAATGATGGAAATCTTAAAGTCTGCATTTATTCTCCATGCTAGATGCCTGTGAAATAAGGGATGAGGTACAGGATTCTAAAACCTCACAGCTTTGACTTAAATGCTGTTGTAGAAGGATGTGAGTAACCCGCACTTAGAATTTCCTTCTGTGACTAATTCTGCACTTTCTCTCCTCAG
Seq C2 exon
GAAAGTTTCTCCAGTCTAGCGCCTGGATGAAAGCAACTGCTGGAGTCATGAATGCCTCGCGCTTTCTCTCTGCTCTTGTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026582:ENSMUST00000027874:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact

5' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=0.000
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types