RnoINT0132698 @ rn6
Intron Retention
Gene
ENSRNOG00000002723 | Sele
Description
selectin E [Source:RGD Symbol;Acc:3654]
Coordinates
chr13:82355471-82355969:+
Coord C1 exon
chr13:82355471-82355563
Coord A exon
chr13:82355564-82355885
Coord C2 exon
chr13:82355886-82355969
Length
322 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
ATTTAGCACTCTCTCCTCAGGAA
3' ss Score
7.67
Exon sequences
Seq C1 exon
CTGACTGCACATCAAAACTGCTAGAACAGAGAGAAAGAAGCAGGATCAATAACACCCAAGGAATCCAACCCCCGAACAACATCTCATCTAACA
Seq A exon
GTAAGTGCAGATTCCGAGCCACAGGAGCCTTGGGCCTGAAGCATAGATTTATATCTGTGCGCACATATGCAAAAAGGCATTCTGATAAAAGAAATCTGTCCAAACTGTGATAGCATTGCAATTAAAACCCACCTTCTCTCTGTTCAAAATGATGGGAATCTTAACGTTTGCATTTATTCTTCATGCTAGATGCCTGTGAAATAAAGCAGGAGCTACAGGATTCTAAAACCTCACAGTTTTGACTTGAATGTTACGATAGAAGGGTGTGAGTAACCCGCACTTAGAATGTCCTTCTGTGACTAATTTAGCACTCTCTCCTCAG
Seq C2 exon
GAAAGTTTCTCCGGTCTAGCATCTGGATGAAAGGAAGTGCTGGGGTCATGAATGCCTCGTGCTTTCTCTCTGCTCTCACCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002723:ENSRNOT00000030677:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]