BtaINT0130620 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007307 | SELE
Description
Bos taurus selectin E (SELE), mRNA. [Source:RefSeq mRNA;Acc:NM_174181]
Coordinates
chr16:38183853-38184848:-
Coord C1 exon
chr16:38184738-38184848
Coord A exon
chr16:38183875-38184737
Coord C2 exon
chr16:38183853-38183874
Length
863 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TAGTTCTCTTTCTCTTGCAGCAA
3' ss Score
9.64
Exon sequences
Seq C1 exon
CTCCGACTGTGTCCCAAACTCCCTTGGCAGTTGGACTTTCTACTGCTGGAGTCTCCCTTGTGACAATACCATCATTTCTCTTCTGGCTTCTGAAACGCCTTCAGAAGAAAG
Seq A exon
GTGAGGGCATTTATGAATGTACTCCAAAAAGGTTTTTTGAAAAAAAATTTTTTTTCTCATTGATGAGTCATATTGTCTCTCATAGATTAAAATGTAATCAGAATCAAATCACTAGTCATTTAATGATAAACATGAATAAACTGCAGGATAAATAAGCAGAAATCTTAGGAAAAGAGTTTTAATACAAACGTTAGTGTGCTAACATTGTACAGCTCCAGGGGGTGCTATTCACTTTGAACTCTGTGGTCCGAGGAGTTGCTGCACTGAGGCTGCCATAATTAGTGTTCCTGGGAAAATGAAGAAAATGTTTCCAAAAATTGTATTTGGGATACAGGCTTAAATTTGGGAGCATCTCAGGAAATATGCAGTATTCTTGCCAGGAAAAAATCATAGATAGAGGAGCCTGGTGGGCCACAGTCCACAGGGTCACAAACAGTTGGATATGATGGAGCAACTAAGCACACACAGAGAATATGCAAACACATCTCACCACACTCTTGATCTGTTTGACCTACAGAGTCTTTAAATTTTTTTGAACTAAACTTTGACATTTATGAAATAGGAAATTTCATATCAAATCTGATTTGAGATTTCTCATGACCAACTGGAAGACACACAGACTTGGCAGGTGGAGTCTATAGACTATCTGCCTGCCTTAGGAAGCTGCTGTCCTCTTTGCATGAATGTACACTTTGCATTCACCCTGCCCTGTTGTCACCAAGATATGTTTGTGTTCTGATAATTATAGGGGCCTTGAAGGCCTTGAGTTTGCAATCCCTGATAAATAGAGTCATATTGCTTCAGGATTTAAAATGTCCTTGAAAGTCACTTAGCCCAAATTAATAGTTCTCTTTCTCTTGCAG
Seq C2 exon
CAAAAAAATTTTCTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007307:ENSBTAT00000009612:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development