RnoINT0132699 @ rn6
Intron Retention
Gene
ENSRNOG00000002723 | Sele
Description
selectin E [Source:RGD Symbol;Acc:3654]
Coordinates
chr13:82362099-82362590:+
Coord C1 exon
chr13:82362099-82362209
Coord A exon
chr13:82362210-82362568
Coord C2 exon
chr13:82362569-82362590
Length
359 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TCATTTTCTTTCTCTTGCAGCAA
3' ss Score
12.36
Exon sequences
Seq C1 exon
CCCCAGCCAACCCTCCCCGTCCCTTGGTAGTGGCACTTTCTGTGGCAGCAACCTCACTTCTGACATTGTCCTCATTGATCTACGTGTTGAAGAGATTCTTTTGGAAGAAAG
Seq A exon
GTAAATTCAGGCATCCACTCCAAAAGTGAATTTGGAAATTGTCTCTGTGTATATATGTACACCATACACACACACACACACACACACATTGGGAAATTCCAAGTAAAAGTATGGGTTTGGGATTTCTTAGGGGAACTTAGGAGAAAAATCAGGCAAGATGAACGTGTAGCCATTTCCTGGTGTCAGGAAGCTGCCACAGTCTTGGGATGTTTCATTCTCCGCATTTTACCTGAATCGCCACCAAATGCTTGTTACAGAGCCCCGTGATACTGACAGTATAAGACCAGATGAGTCAAGAAAATTAATTGGATTCTCTTAAAAGTTATCAGTCCGAACTAATCATTTTCTTTCTCTTGCAG
Seq C2 exon
CAAAGAAATTCGTTCCTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002723:ENSRNOT00000030677:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]