BtaINT0130640 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011515 | SELL
Description
selectin L [Source:HGNC Symbol;Acc:HGNC:10720]
Coordinates
chr16:38160691-38162937:-
Coord C1 exon
chr16:38162749-38162937
Coord A exon
chr16:38160877-38162748
Coord C2 exon
chr16:38160691-38160876
Length
1872 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TTTTTTCTTTTTCATTGAAGTGA
3' ss Score
6.13
Exon sequences
Seq C1 exon
AAGTGACTCAATGTGTGCCTTTGGAGGCCCCAAAGCTGGGTACCATGGCCTGCACTCACCCTTTGGGGAACTTCAGCTTCATGTCGCAGTGTGCCTTCAACTGCTCCAAGGGAACAGACATGATTGGGGTTGAAGAAACCACTTGTGCACCATTTGGAAATTGGTCATCTCCAGAACCAACCTGTCGAG
Seq A exon
GTGAGCCTATGTTCGTACCAGAGGCTTTATCGTGGGAATCCTGGATTTATAAACCAAGAAAATGTGGTGGAGCCTTACTAAGAATTCTATATCCTCTTTTGAAACATAATTTAACCTAACTTAGATTTTACCATGATACTTTTCAAAGGTGTTATTTTTTCTAATTTAAAAGAAAAACCACAAACAAAAAATAACAACCAACTATCTCAGTGACTACGTCACTATAAATATGTATATATATATATATATATATATATATATATATGCACATATAATTTTCAGCAGAACAGTGTGGTTATACTGTATTTTTTATTTTATTTTTATTTTTTCTCATTGCTATGGAATAATCAGTCTTGCTGAACTGCTGTTGAATTTTGGTTGTTCTCCCCTTTCAATAACACTGATTTTATGTGGTGTCCTGCTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCAACTCTGTGCGACCCCAGAGACCGCAGCCCACCAGGCTCCCCTGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGTCATTTCCTTCTCCAATGCAGGAAAGTGAAAAGTGAAAGTGAAGTCGTTCAGTCGTGTCTGACTCTGTGCGACCCCATGGACTGCAGCGACCAGGCTCCTCTGTCCATGGGATTTGCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCTGTGTGGTGTCCCACTTGACACCAAACAATTTCCTTATTGCAGGGTGGTGGGGTCAGAGGTCTTTATTGATTGTTTTATTTGGTTTATTCTTAGAATCATGTTTTACCTTTCCTCCTCCATGAACTCTCAGGACAATACCAAATTCTGTGAAAAACAAACATACAATCTCTTGATTTTTTTTTTTTTTTCATTTGAAACATGGTGGGTTTTTTTTTTTTTTTTTTCCTTATTTACTGTCAAGATCATCTCTTTAGGGGAAAAAAACTGGTGGTATCTAAACTTGTGAAGTTTTGGTTACATATTCAACCTTTATGCTTTTGACTCACTAGTTTAAGTGGTTTAATTCCCAAAAGCACTATTCAATCATTTTTGAAATCAGAACTAACTGACCAACCTGCTAAATTTCACAAAATCTGAGGGACTTGCTTCAGAGAATGGGGGTGTTTTTCAAAACTTCTTGGGTTGATGTTAGAACAGGTAAAAGGCAGGAAATTCTCTGTCTTCGTTGATAACGCACCGTAAGAGCTCTTGAGGCCAAGGCCACGTAGCATGGTGCTTCTAGAAGAGCTAGAGAGTTACCAGGGCTGGGGAAGCAACATGGAACAGCCAGCTCTCCCCTCGTCTCCCCAATCCCACTGCTCCCCTCCCACCATGGGCGTTCTGGGTTCTCCTCATTCTACCTCTGACTCACCACTCTCCATCATTCTCAAGACAAGAAAGCCTGGAAGCATCATCAGAAGTAATTTCTAGAAATTAGAAATGTCTAGATTCATGTCCGGAGAAGGCAATGGCACCCCACTCCAGTACTCTCGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCACTAAGAGTGGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAAGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACAGGGAGAGGAACCTGTTGGGCTGCTGTCTATGGGGTCGCACAGAGTTGGACACGACTGAGGCAACTTAACAGCAGCAGCAGCAGCAGCAGATTCATGTCAATGGTTCCCCAGTTAAGTTAGGCAGTTTGGCTAAAAGCTGTTCCTCACAGAGGGTCTCTGCTCAGAAATACTGATTTTTTTTTTTTTCTTTTTCATTGAAG
Seq C2 exon
TGATTCAATGTGAGCCTCTAACAGAACCCGATTTGGGAACCATGGACTGTAATCACCCCCTTGTCGACTTTGGCTTTTCCTCCACATGCACCTTCAGTTGTTCAGAAGAAGCTGAGTTAACTGGGGAGAAAAAAACTATCTGTGGATTGTCTGGAAATTGGTCCAGCCCTAGTCCAAGATGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011515:ENSBTAT00000046865:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=90.6)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAATGTGTGCCTTTGGAGG
R:
CTAGGGCTGGACCAATTTCCA
Band lengths:
356-2228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development