GgaINT0038542 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:3735176-3735675:+
Coord C1 exon
chr8:3735176-3735373
Coord A exon
chr8:3735374-3735489
Coord C2 exon
chr8:3735490-3735675
Length
116 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
3' ss Seq
GTGCTTCTTTTCCTTTTCAGCCA
3' ss Score
10.49
Exon sequences
Seq C1 exon
CCGTCACCTGCCCGGTGCTCAGCGCTCCAGAGCATGGAGAGCTGAACTGCTCCCACCTCCATGAGAACTTCACCTTCGGCTCCACGTGTGACTTCTCCTGCCAGCCAGGCTTTGAGCTCTTGGGGTCACAGAGTCGTGAATGCACGGCCACCAGGACTTGGACCAGGGAGAGCCCACAGTGCAAAGGTAGAGCTGCTG
Seq A exon
GTAAAAGGGCCATTTGCCTGGAGTTCACCTTGGGATGTTCTTGGGCCTCTCATCCCAAGGATGAAGCCTCACAGTTCCCTGGCTCCTACTTGAGGTGTGCTTCTTTTCCTTTTCAG
Seq C2 exon
CCATCAGCTGCTCATTGCTCAGTGCTCCAGAGCACGGAGAGTTGAGCTGCTTCCACCTCTATGAGAACTTCACCTTTGGCTCCGTCTGTGACTTTTCCTGCCAGCCAGGGTTTGAGCTGATCGGGCCACAGAGCCGTGAGTGCACAGCCACTGGAACCTGGACTGGGAACACCTCGCAGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002643:ENSGALT00000004163:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=86.6)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTTCACCTTCGGCTCCAC
R:
GATCAGCTCAAACCCTGGCTG
Band lengths:
256-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]