HsaINT0147181 @ hg19
Intron Retention
Gene
ENSG00000174175 | SELP
Description
selectin P (granule membrane protein 140kDa, antigen CD62) [Source:HGNC Symbol;Acc:10721]
Coordinates
chr1:169578742-169580915:-
Coord C1 exon
chr1:169580730-169580915
Coord A exon
chr1:169578928-169580729
Coord C2 exon
chr1:169578742-169578927
Length
1802 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGA
5' ss Score
6.45
3' ss Seq
AAGATACCTTTTCCACTTAGCTA
3' ss Score
3.14
Exon sequences
Seq C1 exon
CTGTGCAGTGTCAGCACCTGGAAGCCCCCAGTGAAGGAACCATGGACTGTGTTCATCCGCTCACTGCTTTTGCCTATGGCTCCAGCTGTAAATTTGAGTGCCAGCCCGGCTACAGAGTGAGGGGCTTGGACATGCTCCGCTGCATTGACTCTGGACACTGGTCTGCACCCTTGCCAACCTGTGAGG
Seq A exon
GTAGGATTTTTCATTAGCAACCTCCATTCTGTCCAAGAAGGAATCATGGCATGGTAGAGAGGCCAAGGGCTCTCAGTGTCGGGGTGATCTCTTCTAAGTTCTTGCACTAGAGCAAGCTCTTCAACCTCCAGGAACCATGGTTTTCTCATCTGTGAAATGGAGCTAAGAATTGCAAGGTGCTTGTGAGGATTAAGTACATAAAAAGTATACAATTAAATAGCATGTATAAAGTACCTAGCATAGAGCTTCTGCTCTACTGACATATCCGAGGTATAGGACCATGTCCTATACTTGAGAGGGAGTTGGGAGCAGCGGCTAAGGTGGCTAAAGAGAGTGGTTCACCATGTAGTCTTTGAGGGTAGCCTTTGACAAAGAAGCAAAGGAAGGAACACTGCATCGAAAAAGTGTGTGATGCAATCCCAGGCAATTACATAATTCCGCCAAAATGAATTCTCTGCAATTGCCTCACACCCTCAGTTTATAAGGCGGACAGTGGTAATGGGAGAATAGGAAATTTACGATAGATTAGTGAATTCCCAGACCTGGATGACAAGCCCAACCCTGCTACTATCTAGCTATGAGACTTTAGAGAAGTCACTTAACACTTCTGAACCTCACTTTTCTTGCCTAAAACATAAGAGAGAAGAGAGAAACACTAGAGGATTTTGGTGTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGAGACAGAGTCTCACTCTGTCGCCCAGGCTGAAGTGCAGTGGCACGATCTCAGCTCACTGCAACCTCTGCCTCCCAGGTTCAAACGATTCTCCTGCCTCAGCCTCCCGAATAGCTAGGATTACAGGCAACTTTTTGTATTTTTAATAGAGACTAGGGTTTCACCACTTTGGCCAGGCTGGTCTCAAACTCCCGACCTCAAGTGATTCACTCACATCAGCCTCTCAAAGTGCTGGGATTATAGGTGTGAGCCATTGTGCTCAGCCGGATTTTTGGTTCTTAAATGCTCTGAGTCTGTAAAAACCAGAGGTCAAAGCCCAGAGCAAAGAGGTAGTCTTTACACTTTGAAAAGTTTCAGAAATAGCCTGGAAATGAAATGCTTTATCAAGGAAGAGCATGAGGAAACCAATCTTTATCAGAACTGAGGTCACTCAGGGCTTAATTGTGCTCAGGAATTCACTTTGGCTGCACTCACTTGGCAACTGAAGTCTGATTAGGATGACATCCTGTGTTCTAGAGACAAAGCCCGGTCAGGATCATTTTACAGGACTAGGTAACAGTGTCAACAATAAGCTATGCTAGTCCAGCTTTTTTTTTTTTCCCTATAAGTCCAGCATTTTCCTGTATATACTCTTTTCAGGTTCAATTTCACAGATAATGTCAATATTTAATGAGCACTTTCAATGTACAAAACACTCTGCTCAGCTCCAGAATAAAACTATGAATGACTGAGCCCAACTTCGAGGAGACCACGGTATAATGGGGAAGAATGACAATCATGTATGAACAGCGCAAGAACAGAGGCTGTGGGAGCACATTGCAGGGGCTTCTACCCTTAGTTAAGGTGGGAAGGGAGGGCTTCCTAAGGAAAGGGAAGTCTAAGCTGAGACCTGAAGGGCAGGTGAGAGTGAGTCAGGCCAAGAGGGGCATGGGAAGGTGTTCCAGGCAGTCTCTCTTTTGGAAAATGGAGGTTTTAGGGTTCTGAACACACTGAAAATGTGGACAGGAAAGATATAGCATCTAGGAATTTTTTCTGAGGAAGAACCCGGCCCTTCCATTACCTGGCTTTAGAAGATACCTTTTCCACTTAG
Seq C2 exon
CTATTTCGTGTGAGCCGCTGGAGAGTCCTGTCCACGGAAGCATGGATTGCTCTCCATCCTTGAGAGCGTTTCAGTATGACACCAACTGTAGCTTCCGCTGTGCTGAAGGTTTCATGCTGAGAGGAGCCGATATAGTTCGGTGTGATAACTTGGGACAGTGGACAGCACCAGCCCCAGTCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174175-SELP:NM_003005:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTCAGCACCTGGAAGC
R:
TGCTGTCCACTGTCCCAAGTT
Band lengths:
348-2150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)