MmuINT0140973 @ mm9
Intron Retention
Gene
ENSMUSG00000026580 | Selp
Description
selectin, platelet [Source:MGI Symbol;Acc:MGI:98280]
Coordinates
chr1:166060210-166062454:+
Coord C1 exon
chr1:166060210-166060395
Coord A exon
chr1:166060396-166062268
Coord C2 exon
chr1:166062269-166062454
Length
1873 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GCTGCCATTTTCCCCTTCAGCTA
3' ss Score
8.44
Exon sequences
Seq C1 exon
CTGTGCAATGTCAGAGCCTGGAAGCCCCTCCCCATGGAACCATGGCCTGTATGCACCCAATTGCTGCCTTTGCCTACGACTCCAGCTGTAAATTTGAGTGCCAGCCTGGATATAGAGCGAGGGGCTCCAACACACTCCACTGCACTGGCTCTGGTCAGTGGAGTGAACCACTGCCAACCTGTGAAG
Seq A exon
GTAAGATTACTTTCCACAGCTTTCAATATCACCCAGAAGGAGTCTTGCCATGGTAGAATGACCAGGGACTCCTAATGTCAAGGCCACCTTCTCTAGGATTGTATTTGTTCAACCTCTGGAGGTCGTGAGATTTCTCATCTGTGAAATGGGGCGAAGAGTTGCCAGGTGCATTGTAAAAATTAAGCACGGAAAATGCACACAATGAAATAGCAAGTATGCTCAGGATATGGTGTCACATGGATGTAATCTCAGCACTTGAGAGCCCAAGACAGTAGGATTTCTGCAAATTAAATGTCAGCCTGGGCTAAATAATGACACCCTGTCTAAAACATAAATTAAAATAAAGACAAAGTAAAGAGAAGGAACGGCAAGTGTACAACACAGAGGATAGACCTGGGCACTTGCTTATTTCAGGTTCTGTCTGGGCCTCCACAGGGCAATAGCTTATACTTGAGGAGTTAAAGCAGTAGCTACAGGGATGATGGAGATCTGGGGTCAAAAGCTTTGGAGGTGGGCTCTGCAAATGAATAAGGGAACCTGCATTGAAGGATAGCTGTGGGGCTATCCCAGATGATTGCATAATACATGGAAACTGAGCAGTGTTTGGATGCTTCATCCCTTCATCTTACAGGGCAGGGATGGGGGAGAGAGAGTAGAAGATTGAAGCCTAGATTCATAAAATCCCAGACCTGGATTACAAGCCAGGCTCAAATACCATTAGCTGTGAGGCTTCTGGGAGAGGCTGGGGCAATGGTTCAGTGGGCAAAGCACTTGCTGTTCAAACGTGAGTCTCTGAATTTGTGCCTCAGAATCAGCATAAAAGCCAGGCATGGTGGCATGTGCCTGTCACCTCAGCATTTGAGCAGGGGAACTAGAGATGGGAAGATCCTTGAGTTCCCAGGCCAGCCAGTCTAGCCACAACAGCGATACCCATGCTCAATAAGAGACTCTATCTGAGAAATAAGGTGGAGAATGATAAAGAGACCTGGCATCCACACCAACACACACACATACATGCACACACACACAAATGCACAAACTCCGGCATGTATACATGTGAACACACAGACTTAGGAGATCACATGACATTTCTGACTCGCATTTTTCATGGCTATAAAAAAAAAAAAAGAAGAGACTAGAGGACATCTGGCCCTTATGTGCTCTGATAATGTAAGAACTAGAGGTCAGGGTGAAAGGGTGGTATCTATCTGTGCTCTGCAAATCCGCAGACATCTAGAGAGGTAACACCTGCACAGAAGGGTGTCAGGAAACTAGACTTTATCAGAACCAGGGTCATTCTGAGTATAGCTGTGTGCAGGAACTCACTTTGAGCAGCACTAACTAGGCAAACAATGTCTGATTAGCATCCTGTGTTCTAGGGACACAGTCCACACGGGATCATCCTATAGCACTAGGTCATAGCATGTACAGCAAGCCACACCATTTCATCTGCTTCCTCTTGAGCCCACTTTTCCTTCATCTCTTCTTTTAGAATCCAATAAATGTTTAATGAGCACCCAGAATTTACCCGAGCACTGGGCTCCAGGATGCAGTTCTGAATGGCTTCTCCAGCATCAAAGAGACTGGTGTAACAGGGAAGAACTAATTAGTTCATAAGCAGCACAGTACAGGAGAACCCACCCAAGGAGTCCCTACCGCTCAGTGAGGGTGGCCAGGGATGCCTTCTGAAGGAAAATAATGTCAAAACTGAGATCTGAAGCGAGGCAGGCAAAGGGGGACACGGGATGGGTAGTTTTCCTTTTCGACAAAGATTTGAGGTTTGGATTATGTGGGTGATGTGGGCAAGAACGCAGCAGCATCTTCCAGGAGACTCTTCTAAGAAAGACTTAGTAGCTGCCATTTTCCCCTTCAG
Seq C2 exon
CTATTGCGTGTGAACCTCCGGAGATCCCCATCCATGGGAGCATGGACTGCGTCCCATCTACAGGAACCTTTGGGTACAACAGCAGCTGCACTTTTCTCTGTGCAGAGGGGTTCGTGCTGAAGGGAAATGATGCCATTCAGTGTGCTGACTCCGGGCAGTGGACAGCCCCAGCCCCATTCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026580-Selp:NM_011347:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAATGTCAGAGCCTGGAA
R:
TCCACTGCCCGGAGTCAG
Band lengths:
346-2219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: