BtaINT0130661 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020755 | SELP
Description
Bos taurus selectin P (granule membrane protein 140kDa, antigen CD62) (SELP), mRNA. [Source:RefSeq mRNA;Acc:NM_174183]
Coordinates
chr16:38068734-38074694:-
Coord C1 exon
chr16:38074509-38074694
Coord A exon
chr16:38068920-38074508
Coord C2 exon
chr16:38068734-38068919
Length
5589 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CCTGCTTCCTCCCTCCTTAGCAT
3' ss Score
9.68
Exon sequences
Seq C1 exon
CTGTCCAGTGCCCGGCTCTGAAGTCTCCGGAGCAAGGAAGCATGAGCTGTGTCCAGTCCGCGGAAGCATTCCAGCACCAGTCCAGCTGCAGCTTCAGCTGCGAAGAGGGATTCGAATTAGTTGGGCCAGAGGTAGTGCACTGCACAGCCTTGGGGGTGTGGACAGCCCCAACTCCGGTGTGTAAAG
Seq A exon
GTGAGTTCCAGGAGGTTGAGGATGTATAATGTCCACTGCATCTGGTTCTTGCTGGGAGCACAGATGAAACCACCCTGAATCACAACTTGACTCTCCTTTTACCTACCACTCAGCTAGACTGGGGGCTTCCCTGGTGGCTCAGATAGTAAAGAATCCACTTGCAGTGCAGGAGACCCGGGTTTGATCCCTGGGTTTGGAAGATCCCCTGGAGAAGGGAGAAGCTACCCACTCCAGTATTCTTGCCTAGAAAATTTCATGGAAAGAGGAACCTGGCGGGCTACAGTCCATGGCGTCGCAAAGAGTCAAGCAATTCAGTCATGTCAAGCAACATGACTGAGCGACTAACACATGCACACACACACACACAAACACACACACACACACACACAGAGCTAGATTGGGTTCATCTGGGATAGGAAAGGAGTGTCAGGCTCTAGAAGAACAAGAGGCTGATTTTACTATTGACTGTAAACAAAATTTAGAAGTCCTCCTCTCCCCAAAACTCACTGCCCTCAAGTAATTTCAGAATGACCTCATTCATAAATTTCACCTAAGATGGAATGGTGACATCTCCATCTGTAAGTAGATTCTAGAAAACCTACCAAGAGAGGTTTCTAGCAGTAAAGGGGATAGAGGACATTTGATAAAGGAGTCTTGAAAGAAACTTTTATTTTAAAGAGATTTAGGTCCTCCCGAAGCTTGGTTCTACAAGTCTGGACAAACGTCATTAGGATCTCCTGACCCTTACAGATTCCTAGCTCCACTTAGATTTCCAGAGGTGGTTTCACCATTGCTCTCCCAGCTGTGAGCATGGTTCTTCTCCTTCCTCAGTACCTTTCTCTATGGCCTTGTTGATTCTGGCCAGCTATGCAGTGTGAGTTCCTGGAAGCCCCTACCAAGGGAATCCTGGACTGTGTCCATCCCCTTGTTTCCCTTGCAGTGGCTCTAGCTGCAAATTTGAATGCAAACCTTGCCATCGAGTGAGGGGCAAGGCAAACTGCTGCCTTGGCCCTGGCTGGGGAACCCCACCCTTGCCAGCCTTCAAGGGTAGGATTTTTTCACCAATAGCCCGCAGTCCACTGGGTAGTATAAGTTCATGCTGTCTATTTAGGCAAGGAGTCTTGACACAGTGGGGAAGACCAAGGGCTTTTAATATCAGTATGATCTTTTCCAGGCTCTGATCCTGAAATGGGTTGTTTAGCCCCCAGGAGGGATGGTTTTCTCTTCTGTAAAATGAGCTATGAATTGCAAGGAGCTTCTGTGAAATGAACTATGAATTTCAAGGAGCTTTAATAAGGATGAAGCATATAAAAAGTATACAATTAAATAGTATGTATAAAGTACCTCGCAGAGAACCTTTGTTTCTACCTCTTTTTTCCCTGTCTGCCTCACCGGTGTCTAGAAGCAGTGGGTCAGTGTCCTTGCTATACTTCAGACAGAGTCAGAACAGTGGCTATCAGGACACACAGACAGATTGCTCATCACAGTCCTTGGTGGCAGTCTTTGACAAAGGATCAAAGGAACACTGTGACAAAGGATCAAAGAGAGGCTGTGATACAATCCGAGGCAGGTATCTAATACCATAAAACTGCGTTCTGTGCAACTGCCTCACACCTCACACCAATTGCATCTTATCAAGCAAAAATGGGGAATAGCATAGCAAGAAATTAAATATTGGATAAGTGAATTCCTGGAAGACCTGAATTATAAGCCCAGCTCTATTACTGTCTACATGTGAGACCTTAGGGATGTCACTTAAAATTTCTAAACCTCACTTTTAATCTGCAAATTTAGAGAGAAATGCTAGAGGATCTTTGGAACTTAAATACCCTGATTCTGTAAAACCTAGAGGTCTAAGGTCACTGTGTGCAGTCTTTGTATTCTGAAAAACTCCAGGAATATTCTGGAGATGAAATGCTTTGTCAAGGAAGAGCATGAGGAAATCAGCCTTTTTCAGAACTGAGGTCACTTGGGGCTTAATTATGCTCAGGAACTGACCTTGGGCTGCACACTCACTTGGCAACCGAAGCCTGTTTAGGATGACATCCTGTGTTCCAGAAACAAGGCTCATTTAGAATCCTTTTATTGGGCTGGGTATTAGAGTGTCAACAATAAGCTATGTTGTTTTCGCTTTTTCCTTAAAAGTTCAGTCTGGCTATATCTCCTCTGTACAGATCCAATTTTCACAAATATTTTCAATGAATATTTAAAGAGTACCTTCAATGTCTCAAACACTGCCAGGCTCTCAGATACAATTCTGGATGACTGACATCAGCCACAAAGAGACTGCAGTCTAAGGGGCAGAGTTATAATACGGCATGAACAGCTCAAGCACAGGGGCTGTGGGAGCATGCTGGAAGGGGTTCTACCCTGAGCTGGGATGGGCAGGGAAGGTTTCTTAAGCAAAGTGTAGTGTAAGCTGAGACTTGAAGGGCAGGTGAGAAATTCAGGCAAAGAAGGGGAGAGGAAGGGAAGGTGCTCCAGGAAGATTCCCCATTTGGAAAAAGGACAATTTGGGGTTCTGAATATACTGACAATGTGAGTCAAAAAGATGCATGATCTCTTGAGGGGCTCTTCTGCAAAGGAATTGAGCCCTTCCACCACCCAGTGTCTGACAATCACTATTTCCATTTAGCCATTGCCTGTGAGCCCCTGGAGAGTCCTGTCCATGGAAGCATGGATTGCTCCCCGTCTTTGAGAGCATTTCAGTACAACACCAGCTGTAGCTTTCATTGTGCTGAGGGTTTCACACTGAGAGGAGCTGACACCGTTCGATGTGCTGATATGGAAGAGTGGACAGCGCCAGCCCCAGTCTGTCAAAGTATACTGTGACATCATAATGTTGCTTCCGTGCCTTTCGGCTTATTAGAGGCATCAGCATCTACATTTAGTTCTGTCATTCAGTTATTGCTCAAACATTCACTGAGAATCTATCCTGTGCCAGACCCTTTGCGCTGGGCACTCAGGATGAAGTAGTGTGTGAAGGCAGTCTTAGGGACATGTTCATTACAGCATCCTGAAATGCAAGGTGAGAGCTACACTGACTGACACAGATGTGGTGAGTTAGCATGAAGGACAGGGGGTTGAGACAGAGCAATGACACATGAGGAACAGCATGGTACAGGGCAAGAGTAATGACAAGACTTAGTCCAGTTCTGTCCTGTCCTGACAACAAGCTCTTGGTCTCCCTGAAACTCAGTGTCACCTGCAAAGTAAAGGTACTAATATTTGCCTTACCTACCCACCTCACCAGTGGTTGTGGATTAAAGTGTGTAAATGCAAGCTTAAAACTGCATGAGCTTCATAAATGTAGGTAAAATAATGATAATAACATTACTTTGTAAATCATATGTCTCTGATCTGATTTTACAAAATCATCTCCTTTAGATAGCTCCTGTTCTCAATATTTTGCTCTTGAAGAACAAAATAGGGAAGCCACTAGGATTATTTTCTTTTACAAGGGGGAACTGCACACAGAATTTATGTCCCAGAAGTGAAATACTATTAATAGCATCTTATGTGAGATCCCAAGCAGTTTATGTGAATCTCCTGGGTCAAAGTATACCCTGATTTTAAAATGAGGCAGTGGTTTGAAAGCAGGGTCTTGAAGAGAGATGTATACATCCATGTTCATAGCAGCACTGTTCATAATAGTTAAAATATGGAAGAAACCCAAGTGTCCCACACAGATGAACGGATGAGGAAAAATGTGATGTATCCATACAATGGAATATTATTCAGCCTTAAAACGGGAGGAGACTCTGGTTTCCCTGGTAGTTTAGATGGTAAAGAATCTGCCTGCAATGCAGGAGACTCAGGTTCAATCCTTGGGTAGGGATGCCCTGGAGAAGGGAATGGCAGCCCACTCCAGAATTCTTGCCTGGAGAATCTCATGGACAGAGGAGCCTGGCGGGCTGCAGTCCATGGGGTCGCAAAGAGTCGGACACGCTAAGCGACTAACACTTTCGCTTTTCTGACATATGCTACAACGTGGATGAATTCAAGGACATTAAGCTGAGGGTAGTAAGCCAGTCACCAAAAGACAAGTACTCAATGATTCCACATATGGGAGGTACTTAGAGTAGTCAAAATCAATGAGACAAAAAGTATTAAAATGGTTGTTGCTGGGGACTGGAGGGAGTGGGTGTAGGTAGTTACTGTTCAATGAATACAGAGTTTCAGTGGGAGATGAAGAATGTTTTGGAGATGGATGGTGTTGATGGTTGCACAAAACTATGAATATACTTAATACCACTGGACTGTACACTTAGAAATGGTTCACTGGTAAAAGATAGGCTTTATGCAATATGTATTTTACTACAGTTAAAAAATGGAAAAAAAAAAAAAAAGTGAGGCAGTAGAGGACTAGATCAGTACCGTGATGGGGAGGCTTAGGGAGGGGAATGGGATCTATTGTCTGAGAGACAAAGGCACAGAGAGCACTGCGACATGCTTAAAAGGGAGAGGTTCTTAAGGGGTCACTGGAGCCAGTCTTGTCTGCAGGCAGGTAATAGAAAACTGGCTTATTCTCTTAAGCATCCAGATACATGTTCTCAGTAACTCCCTTGATAGGCCTTCCTAGCGTTCTCCACTCTGACAGGCTAGGTCAGCATCTGATGCATAGCTATAATGATTTTAAGACTATGACTACTACTGATATACTGCTGGATGCTGCTACTACTATTAGTAATAATAGCAATATATAATATTTATTGAACATTTTAGTCTAACTCCATGAGATCATTAAAAGTATTGCTCCCATTTTAAAGATGAGAAAAGACTTATATATAAAATGCAGGTGTTCTCTCCATTTAAAGCCATATACTTCATATGACTGAGATCATAGTGTACATATAATTTATATTCTGCTTTTTCACCTAACATTGTACTTTGAGACACCTCTCATATCTTTTCAAGGTACAATAGATCATATTCCTTTCATGGCTCTACCATAGTTAATTTTCAGCCTCTAATTAGTGGCAGTTATGTTTGTTTTCAATATTTTGCTCTCACATATGATAAAAAAGGGCTTCTCTGGTGGCTTAGCTGGTAAAGAATCCACCTGCAATGTGGGAGACCTGGGTTTGATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGGAAAGGCTACCCACTCCAGTATTCTGGTCTGGAGAATTCCATGGACTGTATAGTTCATAGGGTCACAAAGAGTCGGACATGACTGAGTGACTTTCACTTATGATAAATGATAAAAATTTAGTGGTATTTATGTTTGTTTTCAGTACTTTGCTCTCACAAATGATATAAAATTTCTCCAAACTGATTTTTGATATGCATCTTATTACATACTTAGCATCAATTCTTGGGTCCAAAATTACGATATTTTTAAAACTCTGGATGCATATTATCAAATGCTTAACAATGACTCAGCATTTCCTCATTAAGTCATTCAACTGGCATTGTGACTATATGATACTTTTCTCATCCTCCTTGTTAAACACGCCCAATTCAGAGATCCCTCTTGTTGGCATTAGAAAGAGTTAAGGGGTGGGAATCAATGAGTACTTGTGTATTACTCCTTCCTCACTCCCTGCTTCCTCCCTCCTTAG
Seq C2 exon
CATTGCAGTGCCAGGATCTTCCAACCTCAACTAAGGCCCGGGTGAACTGCTCGCATCCCTTTGGCGACTTTAGGTACCAGTCGACCTGTAGCTTCACCTGCGATGAAGGTTCATTCCTGGTGGGAGCAAGTGTGCTGCAATGCCTGGATACGGGGAACTGGGATGCTCCTTTTCCAGAATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020755:ENSBTAT00000027661:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development