RnoINT0132788 @ rn6
Intron Retention
Gene
ENSRNOG00000002794 | Selp
Description
selectin P [Source:RGD Symbol;Acc:3656]
Coordinates
chr13:82447345-82450113:+
Coord C1 exon
chr13:82447345-82447530
Coord A exon
chr13:82447531-82449927
Coord C2 exon
chr13:82449928-82450113
Length
2397 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CTGCCTTCCTCACCCCTTAGCGT
3' ss Score
9.51
Exon sequences
Seq C1 exon
CCATTGCATGCGAACCGCTGGAGAGCCCCCTCCATGGGAGCATGGACTGCTTCCCATCCACAGGAGCATTCGGGTACAACAGCAGCTGCACTTTTCGCTGCACAGAGGGATTCGTGCTGATGGGAAATGATGCCATTCATTGTGCTGACTTGGGGCAGTGGACAGCCCCAGCCCCAGTCTGTGAAG
Seq A exon
GTACTGCGATATTGAATCATTCCTCAGCCATTCCTTGGAGCCTCTCAGGCACTATGCACACTTGACACTACCATTCGCTTATCTGTCAGACGTTCATTCACAGACAGCTTGAGATATGCTGGGCTCTTTGTGTTTAGTGCCAAGGATCAAACAGTGGGCAAAGCATCTTTTAAGTGCAGTGTTCAGGACAGCATAGTTAAGGCAAGACATGCTTTGGCTCACGCGCCAGGAGTGGGCTGAGGAGATCGACACTGAGGAAAAGGGTGATGAGTGAGGAACAGAAGGAGATGGTAGAAGAGGAACGGACAAGGCCTAGTTCTCTGGGTTGTTATGTTGTTGTTGTCAGCAAGCTTTTAGGCTCTCTGGGTTCTGTGACTTCTATTAAAATGAGACACTAGTAAAACTTTACCTACTGTGTCACCAATAGTGGAGAGTCAATGGGTTTTATTTTTTTTGGTTCTTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCGTCAATGGGTTTTAAAGCCATTGACTCTGCTCTGCGTGGTCTCATGTGACAAAGGGACCCTCTTTTAGTATTCTGTGTTTTCGATGTTTTGCTCTAAGATAGAAACTGAGTCACAAGGAGGTCACTGGGATTGCCTTCTTTGACAAAGGATAGCCGTACAGAACCAAGTTCCAGAAGTGCACGGCAGCAACCTGGGTCGCCATTTACTGGTGCTCTTCAACAACTGTGTGAATCCCAGATCTGTGGGCGCCCTCATTCTGAATTGAGGGTTCTGTTGGTTCTCCAGAGACTTCCAAGTACTTGAAGAGATATGTGTCTATTCAGCTCCATAGTAGCACTATTCAAATAATAAAATGTGGAAGAAAGTGAACATCAGCAGATGAATGGATAAAGAAAATATGGTATCCATATATAATAGAATACTATTCAACTTTAGAAAAGGAATTTCAACATAGGCTCCAATATAGATAGACTATAAAGAGTGGTGATGATTAAATGTGCTGGTGTGTATTGTCCAGGAGACATAGAGATGCTAAGCCCTGAGACACTCTAAAAAGATCCCAAGGAATCGCTCCAGCCACTTTGTCTTCAGACAAGTAAATATCAAATAATCCAGAACGGATAGTTGGATATTTTCTTAAGCATCTCGAATCGAAGTCTCCTTTTATAGTCCTTGCTACTGTTTCTACACCAATTGTCACCAACAGTCAGGGTCTACGGCTGCTGCACAGCCTCCGGTGTCTGCCAGTGCCTCTGCAAATGCTTCTGGGCTGGTAGCCAAGGTTTATTGAGCAGTTCCTGTAATCTCAGACAGTCTGATGCCGAGAGAGTGAAAGCTATTATTCATATTTTAGGTGTGAAAAAATAGAAAATAAGTGTGTTTCCTCCATATAGGACTATCTTATATATTTAAAGATTGTAGTATAGGAGAAGGACCAGCTAGGACAATGGGAAAGAAAATGAATAAGGTACAATCATATGTGGCTGTGTGAATATGTGTGTGCGTGCGTGCGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACATATACAATATCATAATGAAGCCCATCACTTTGTATGCTAACACTGTTCTATAAAAAAAAATCAGTTTGACCAGGACCATAATTTTTATTCTGCTTTTCCACTGAATGTTGTATAGACATACACCTCCAAAATCTTTTGCAAGTAAAACACATAAAATTTAAGAGCCATGAGTATTCCTTTTGTGAATCCATAATTTACTTTCAGCCCCATTTATGGTTGTTTTGTTCTTACAACATCTTAACAAAAATCCGTGAGTTGATTTTTGTTATGCTTCTTGGTTTTAGGCTTTGTGGAGATGTTTGAGTCCAAGAAATGATAGCTTAAGATCTGTTGGTACACACTACTAAACTTTCCTACCCTGACTCGGCCAACACTGGCCCAAACGTTTTTCCTTGTAAAAATCCATCGAGCAACATTGACATTAAATGTCAACCTATTTAACTTCCAAGTTAAACAAGCCCAACTCGTGAATCCTTAAAGACAATGTTCAGTGAACTGAGTCATCTAGAAATCAAGTAATCTATGATCCTACCTATATATGCTATTTAAAGCAATAAAATCATGGAGGCAGAGAGTCAAATGGTAGAATGGAGGGAAAGAGGACTTACTGTTAGTGAGAGTGGAGTTCAGCCTGAGGCCATGAAGAGTCCTAGAGATGAGGGCTGGTGAAGACAGTATGAAGATTCAAATGCAAAGACACCGAACCAGACATGAACAGGGCTGAGGCCAAGGTCAACAACACTTCTCTAGGGCTCTTCTCTTACGCCCTGCCTTCCTCACCCCTTAG
Seq C2 exon
CGTTGCAATGTCAGGAGTTTCCGGTCCCAAGTAAAGCCCAGGTGAGCTGCTCGGACCCCTTCGGGACCTTGAAGTACCAGTCAGCCTGCAGCTTTTCCTGTGATGAAGGCTCACTCTTGGTGGGAGCAAGTGTGATAAGATGCTTGGCTACTGGACACTGGAGTGAGGCCCCTCCTGAATGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002794:ENSRNOT00000003759:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
NA
C2:
PF0008415=Sushi=WD(100=93.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]