BtaINT0132411 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015375 | SH2D3C
Description
Bos taurus SH2 domain containing 3C (SH2D3C), mRNA. [Source:RefSeq mRNA;Acc:NM_001098039]
Coordinates
chr11:98446881-98454062:-
Coord C1 exon
chr11:98454023-98454062
Coord A exon
chr11:98447010-98454022
Coord C2 exon
chr11:98446881-98447009
Length
7013 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTTGCTGTCTTCTGCCTAGTTC
3' ss Score
8.02
Exon sequences
Seq C1 exon
GGCCACTGCAGAGCCGGAGGCTGGCGGGGACTATGTGAAG
Seq A exon
GTAAGAGGGGCTGGGCAGGGGACACTGAGGGGGCCCAGAGCCAGTTCCAGGAAGGGCAGAGTCCTTTTCTGGCCTCATTAGAAGTCAGACCTCACCCACTGTTCTCAGAAGGAGAAGGTCTAGGGGTCAGGGCAGCCTAAGGGGTCTGCTTTCGCTCCAAGCATCTTCTTCCCAGGCCTGCCATCATTCTTTCCTGGCCCCAACCTCAGGACTTCCCAATGTTTGTTCCCACCAGACCCCATCCAGCCGCCAGCTGGACAGGGCCCCAGGGGTGCCCCCATGGGAAGACGGGCTCTAATCCCACTTGGTCTCTGAGCTGGAACTGGGAAGGGGGAGCAGGAAAGGATGACTCAGTTCTTCATCACAGATAACACAGTCGCCTTGATCAGAAACTTAACTTGTCCTGAGCACAGGAAATGTTGAAAATGCAGTTTTGAAATAATAATGATAACAACCATAATACGATGGAACATTTTGAGTGCCTACTGTGTGCAGAGTCCTGTGCTGGCTGCTGGCACTGAAAGGGAGTCAGCTCTGAGCTATTTATATGAATGAGGTCTTTGATTTCTCCCCTCATCATTGGGCCTTCTTGTGCACGTGTATGGATGGGAAACTTGAGGCCCAGAGAAGTGCAGTGACTTGCCCACAGCTGCACAGCTACTGCAGGGCTGAACTGGGATTGCTGTCGAAGTTTATTTGCTCCCAAGACCATGGACAGAGCTCTTGGCCTTCCTCATCCAGGAGTACCACCCTGAGCTAGGTCCTCTCTCTGAGTATGGAGCACGGGGCAAGGAGCACCAGGCCCTGTGTTTCAAGGGCTCCTGGCCCATGTGGGATCAAAGGAGAACCACTCAATGGTCTGGGCTTGTGTTTTGTCATCCAGCACACCCAAATTTTCGAGTCAGACCTTCTACTTATTTGCCACATGACTTTGGGTGTGTGTGTCACCTCTCTGAGCCTCAGTGTTCACCTATGTGAAATGGGGTAACAGTGGTACCTCCAACCCAGGGTTTCTATGGGCTCAATGAATCCATGCCCATTCAGGGGGGTATCTTGTCTGGTTCCTGACCCCAGGGACTTTCCATCACCCATAATACTGCCTGGAAAGCCCTGTGTAAGTGATCAGTAATGAGCACTGTGGGAAGTGCTCAGATTGCTGTCCCTTAACATCAGCAGAAGGCTCGATAAGAAGCCACTGTGGCTGTGGAGGTAGGAGATGACTTTCAGCTCAGGAGCTGGGAATGAGGAGATCAAGGAAGGCTTTCTGGAGGAGGAGGCATTGAAGCCAAGCCGTTGCAGTTGACCAGGAATATGCACCAACACCCTCTCTCCAAAGAGAAAGCTGGAAAGAAGATAAAGATAAGCAGAGATGGGTGGTGGAATGATCCAGGCAGAGGTAAGAGTGTGGGTGAGGTCAGAAAGTGAGCTGAGTGAGCCCAGGAAATGCAGCCCAGGGCTGCAGCAAGTTGAGCTGGAGCTGCTGCCAGAATTTGGGCCCTGGCTTCTCATCCAGAGCCCTGGCATCACAGTGGGACAGAGGCCTCAGGGAGAACCAGCCCCAAAGCCAGTGGTAGACCACAGAGACATGTATTTCAGCACCTCACAAATCCCAGTTGCAAGGTAATGAGATCCCCATCACCGATGGTAGTGAGATCCCTGTGAGGATTATTAGCTTTGTATTTTTCCTTTAGTTTATGGGGCTGAAAAAATGTAATTAAAAATGCTATAAAAGAAAGAATACCCACACACCAGAACTGATTAAACAGTCCCCTAAAGAATGAACTCAAAGGAATATTAGTTTTAGCTTTAAGCCTCAGAAGAGAATGGAATCAATAGTCAGTTACCCAAAGTCCATTCCTCACCTTACATGCTCAGCTGCCAGAACTCCAGGGTTCTCAGATCATGATGCAAGTACTTTGATTCTAAGGCAAGGATTCTGAAGTTCCAAGACCATAAAATTTTATATCCATGCTCAGAGCGTCAGACGTATTTACAGAAAATAATCAAACATCTGAGAGGTGAACAGAGAGGTGAACTCATCTACCTAAGGTCACACAGCCTGCCACAAGATTTGAACTCCAGGCCTGACTGATGCAGAGTCAGTGATGACTCTCTTTGCACTGAAGAGCCTACGACCAAAGGTCCGGATTCTAAGACACTAAGCTTGAAAACAATAGCAGGCATTTCTTGAGCACTTGCTTAATGTCTGGCAGCTTATATGCATCAGCTCAGCCAATGCTTACCCGAGTTCTGTGAGATCGGCACAGGTATGTTTTCCAGATGAGTAAGTCTGGGCTGCAAGAGAAGGGACTGGTTGGGTGGAGGTGGGGGCACCGCTAGTTGAAGCCAGGCTGATTCCCAAACCCCAGAGCCTTACTGAGTTTCCTTCCCCACCCCCAGTCTGTCAATGACATCTCGCATTTCCCAGAAGAGTGTATGATTCCAAGTCAGAGATGAGAAATCCTGGACTCTGGGAGATTTCCTTAGGCCACAAAGGATTTGGTCAAATGTCTACAGGGATTTTTCCAGCTTTAGACATGGTTTAATTCAAAATCTCTGCCCTCTCCGGGTCAGTAAGGGGAGAGGTGAGTGGGGGAGGCAGGACCACTGCCCCCCGCCCCGCCCCCACCCCGCGCCTTTTCCCGGCCCACGCCATCCTTCTGCCCTCTTGACGCCCCCCTTGGTAGGTCCTCAGCTCCGCATCCCCAGACTCCGGGCTGCCGGGGCTGGAGGGCGGGGGACTGGGGGGCGAGGGGGCGGGGAGTCGGGGGCGGGAGGAGGGAGGAACAATGGCCCCCTCCCCTACCGGGGCTGGCTGGAGGGTGGGGTCTCCCCGCCCCGCCTCCCCGCTCCTCCCCCGACAAGGCGATGAGGTAATCGCTCCGCCGAGAGGCACGCGCAGCCGGTGCCCAGCCCGGTCGGTCCCGCGCCCCTGCCCCGCCGGCCGCCGCCCCCTGCACCGTCCCGGCCCCGGTCGCCCGGCCCCACCATGACCGAGCGGTGCAGCCTGTGGAGCGCCCTGTCGGCCGCCGCCTGCTGCTTCTACCGCGGCTCCTTCGTGCAGGTGCAGGTGAGGGGGCGGCTCGGCCCCCGCCAGGCGCTCCGAGCTGGGACCCCGGGCGCTCGCTGGGGCAGCCGGGGGAACCTCAGCCTGCGGCGCCGCGCAGGGTCCGGCGGGGCAGGGACTGGGGGCAGCGGGCTGCGGGAGGGGGCGGGGTCGCCCCAGCCTCACCTTTGGGCGCCCAGACGCTCCGCAGGGTGAGGGTCCAGCCGCCCCTCCCGAGACTTGGGGCTGCGGAGGCTGCCGTTCCGGTTGCTTCTGCCTCCTCCGCAGGGAGGAGCTGAGCTGGGGCACTGGGTACCAGGAGATGGGGTCTCCGGCGTCCTGCCGGTTCTCCTGCGAGCACTCCGGCCCCTGCATCTGACCCGGGCAGACTGACTCCCGCATTGTACCGGGGGGCGCTGGGCCGGGGTCCAAAGGCTGAGAGAGGGATGAGAAGCTGAGGGGATGCTGCCGCGGCTGCGGTCGGAGCGCCCGCGACTCTCCTGCCCTCTAGGTGGGCTCGGGCATGCTTGGGGCGCGGGGCTCCTAGCCCAGCTGGCCGGGCAGTGCGGGACGGCGCTGTGGCAGTGAAAGGGTTAAACGGAAGGGGGTGGAGGGGAGGACCCGGACCCCGCCTCTCTGCGGAGCATCATCTGGGGATGGCTTTGCTTAGGGTTGCCTGACTGAAGGGAGCTAGAGGGGTCTGGCTGGGCACTGGCTGTTGCGAAGGGGTTAAGACCTTGACCCGGGGTCTCCGCGCTTTCGCCTCTCAAGCCCCGTGGGGGACGCTGGGCGCATCACTTCTGCGCTCCCCCAGGCTCACACACACACACACACACACACACACACACACATATACACGCACGCTTCGAGCCCGCCTGAATGACTGCCCTGCCGGCGGCTGAGCGCAGCATCCCTGCACCCGCCAATCAGGCGCTCGCAGGCCGGGAGGCGGTGAGATCATCTCTGGCCAATAGCAATGCTCCCGGGCGCAGGGATGCTGCATTCGCGCCCCAGCACCCACTCCCTTTGGGAGCTAGGGACCCCCGGGTCGAAGGTGAGGAAGAGGGCACAGGGACCCTAGGGTTCCCTAACTTCAGGTGTGTGGGATGACCCAGTTCGTCCGCCAGATTCTCCCTAACGGTTGATTATGGTTGGAAAAGCAGAGCCCAGTCTCCCACCCCCTATTTATGGCCCAGAGAGGGAAACTGACTGGCTCAAGGCCACACAGTGGCAGGCAGAGTCTTGGGACCCGGTTCTTTCCCCCGAAGCCCTCTCCCCTTCTTTGCCCCCCGTCCCTCTTGCTGCAGCTGTGGTACTGGGGCAACTTCTCAACTGCATGCTCTTTGTCAAGGAGGAATCTCCCCCATGACTTGCACTCTTCCCTCCCCAGGGTGTGGTGTGGTTTAGGAGAGGGGCCAGGACCTTGAAGACTAGGGAACTCCATGGAGAAGTGTAGGAACCTGAGAAGGCCCAAATGTCAGCTCACCCTGGAACTCCCTGCCTTTCTGGGGGATCAGTTTCTACCCTGGGCAGGGGATGTTCAGAATCCCCATCTCCAGGCCCTGCCTTTTCCTGAGCACTCATCTATGTCACCCACTCCCACCATCTGTCCCCAGAGCCTTACAGGCTCCTCACAGCTCAGAATTTTATGAGCCCATCGCCAAGCTGCTCCTGCCACCAGTCTTGCCCACCTTGGAGAGTGTTTCATTGTCTTCCCAAGCTGTCTGCCTAGAATCCTCTCTGACCCACGCCACCCTCTTCCCTGCACCCCATCAATGGTTGTCTAAACACCCTTCCCCCAGTCCCCACCCCAACACTCCACCCTGCCCTGCCATTGCCTGGAACACACTCCAGGCCCTCTCCACACAGCTGATCGAACTTACCCCAATGCTTTAAAAACCCTCTGCAGCTCTGCTGTGGCCTCTGGGTTAATCTCAGCTTCCCAAGGCAGATTCACAGCCCTGCCACGCCTGCCCCTGCCACCCCCCAGCCCTTCTGAAGCTTCTTCCCCCACCCCCAGGGCCTTAGCTCTTTCTACAGGGCCCTGAGTTTGCCACTCTCTTCCCAGAGCTCTTTCTTGCCCACCTGGTTGCCTGTCAGTCCCCACTGTAATCCTTTTGCTTGGCTCATTCAGGTCTTGGTGGAGACATCACCTCTTCAGGGACTCCCTGACCAGATGAGGAGGGACATGCTCATCTCCTCCTGGAGCTCCCTGTGTGTCTCTGAGCATCCAGAAACCCTAGGATTGCTTGTCAGTATCTGCGTAGCTCCCCTAGGGCTGAGGCTGCCTGTACTGATGACCTTGGATTCAGTCCCTGTCCTAGGGACTGTCCTAGAGTGGCATAAGACCTGTCCTAGAGTGGGGGTTCCATCAATGTGGACATAATGGAGTCAGAAATTCAAGATATCTCTGAAGCTGGGAAATGGGGTGTCTTAGGAGCAGTGTAGACTGAGGTAAACTGAGGCAGTAGAAGCAGAGGGATAACAAATGGAGTGGCAGGGTTAGGCTCTGAGAACTGTGAAAGGTCAGAGGAGGCAGGGAGTGGACTGGAAGCCGCTGGACCCTGGTGAGGAGTGGCTCCTGGGGAGAGATTGCCCTTTAGTGACCCCCTTCATCTGTCTTGCTGCCTGGTCAGTTCTGGGCCAGATCTATCCGTCCTGGGCCAGCCATCTTTGGGGCCTGGAGTTGGGGAAAGGGAGCAATGTTACATGTTCTCAGAGTGACAAGCACATCTGTGGGCTGGTTGCAGTGCTTTGAAGTATTGTCTCCTTTCATCCTTGCAACCTGGTGAGGCAGGTTCTGCAATTGTACCCATTTTATAGAGGAAGAAACTGAGGCCCTGGGGATTCATACAACATAGCCAGAATTGGGCAAGGGCTTCCCTGGTGGCTCAGATGATAAAGTGTCTGCCTGCAATGCAGGAGACCCGGGTTTGATTCGGGTCGGGAAGATCCCCTGAGAAGGAAATGGCAATCCACTCCAGCACTTTGCCTGGAAAATCCCATGGACGGAGGAGCCTGATAGGCTACAGTCCATGGGGTTGCAAAGAGTCGGACACAACTGAGTGACTTCACTTTCACTTTCTGTGGTGGGAATGTACCTGGCAGCAGGGACTCCCATCTCCCTGTTCTTAGGCTTCCAACCCCAGGCCACAGCAACCAGGAAACCAGGAATCTCCCCCTTGGGCAGGTGGAAAGGGGGATCCTGGGCATTAGCCCCAGTGAGTGACCTCAGGCTTCCCTGCTGGGCTGGTTGCCCCATCTAGCAGGGATTGCTTGGGATAGCAAGGAAGAAGGGGCTTTGTGAACAGTAAAGGACATCACAGATGCCTTTGGCGGGGGCCTCTGCGTCCCTCTTTGTAGCTGCCTCCTCCACCCCTGTATAATTCACTGCCCCAGAATGTATCCTCATCCACACAGCCCTGTTTTTGTCCATGGTTTTACCTGAGTACTTGCTGTCTTATCCGCTTGTAGAAATCCTCCCTCCCCCTACTTCCAGATCAGTTTGGTGTCCTTGGTACAAAATGAATTTCATGAGTGCCATCTCCTCCAGGAAGCCTTCCTAGACCACTCTACCTGGCCTAGACTCCATCTCCCTTTTGAAAGCTACCCAGCCCTTTGCCGCTGTCCAGTACTGTGGTGCTGACTGCAGTCTGCTGAAATACTTGTGTTGCTTTTGCCTCCTGTCTTAGACAAGGAGCTTCTTTGAGTCAGGCTTGTTTATTTCCCTGTCTACCCTGGCAATAATGCAGTGCCTAGCACACAGTAGGCACTTTTTGGTGGATTTAATTGAGATTCCTCTACACCTACTGGGATAGGGACTCATGGGTGAGAACCTTTCTGGCATCTGTACCTAAGTGTTCCCAGAGTCCCGGGATAGAATGAGTTCACCTGAGGTGGGGGAAGTTGAGAGGGAAGGGGGAAGGGGCTTCAGACTGGATGCCAACTTTTGCTGTCTTCTGCCTAG
Seq C2 exon
TTCTCCAAGGAGAAGTACATCTTAGACTCATCGCCTGAGAAACTGCACAAGGAGTTGGAGGAAGAGCTCAAACTCAGCAGCACAGATCTCCGCAGCCATGCCTGGTACCACGGCCGCATCCCACGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015375:ENSBTAT00000020433:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.163
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001719=SH2=PU(9.9=18.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development