MmuINT0142973 @ mm10
Intron Retention
Gene
ENSMUSG00000059013 | Sh2d3c
Description
SH2 domain containing 3C [Source:MGI Symbol;Acc:MGI:1351631]
Coordinates
chr2:32737519-32744879:+
Coord C1 exon
chr2:32737519-32737558
Coord A exon
chr2:32737559-32744750
Coord C2 exon
chr2:32744751-32744879
Length
7192 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
ATCTCGCTCTCCCCGTGCAGTTC
3' ss Score
9.49
Exon sequences
Seq C1 exon
GACTGCTGCAGAGCTGGAGGCCGCTGGGGACTATGTGAAG
Seq A exon
GTAGGCTGGGGGTTGGTCACAGTATGCTAGATATGATAGAGCGCTCGGGGTCTGCTGTGAACCAGGCTTCCTCCTGGGAGGAGAAGGAGAAGGTTGGGGGTGGGGGCAGCCCCTGGGGACAGCTATCATTCTGGGAAGCTATTCCCCATGCCTCCTGCCTCTCTGCTAGCCCCAAACTCAGCTGGACAGGATCCCAAGGGTGTCCCCCTGCAGTGGCCACCATAATGAGATCCCAGTCAGCCTGGGTATCTGAGGGCTGAGGCTGGGAGGACACAGCAGGACACAGCAGGAGTGACTCAGATCTTTAGCAGACACTCAGCACAACTCACAGACAAGAGCTGGATTTGGGGACTGGGGATGGGATATGGGGCGGTAGGTGAGCACTTGCCTAGTATACAGAAGGCCTTGGGGGTCAGTCCCCAGCTCCACATAAACTGAGTGTGGTCCTGCATGCCTGTAACCCCAGTACTCATGGGGCAGCGGGATAAATTCAAGGTCATCTTCGTCTACATAGTGAGATTTGAGGCCAGCTTATCTTGTCCTAGAAATGTTTAAGATGTAGTTTGTGTGTGTGAGTGCACGCTTGCATGTGTGTCTTTGTGTGTCTGTGGAAGTCATAGGTAGATCTCACGGTTGTTTCTGTCCATGGTGGGTCTCATTGATTGGGGTTCACTGGCAGGCCCATGAGCTCCCAGGTTCTTTTTGTGTTCACCCCCAAAGCCGAGGTTTCAAAGTAACCATCACAGGTGGCATTTTTATTTTTTTTAACATGGCTGCTGGAGCGTGCACTCCTATCTTCAAGCTTGTATGCCAACACTTTACAGAGTGAGCCAGCCACACAGTACAGGGGTTGTTGTTGTTGTTGTTGTTGTTGCTTGCTCAGCAACTTGGGTGGTTGAGGCAGGAAGATTGCAAGTGCCAGGCCAACTTGGACCACGGTTAAGTCCCTGTTTTAACAAGAAAACATTGGTTTTGAAATAATAGTAATAACAATAAGGCTAAGTAACATTTTGAAAGCCAATTGTTTGCAAAACCATGCTGCTGTTTATTTATTTGTCTGTCTGTCTGTCTGTCTCTCTCTAGATGTGTATGTTGGAGTCAGAGGGCAGCCTGTGGTTCTCTGCTTCCCCTGTGTGGGATCTGGGGGCTGAGCTAGGTCTTCAGGCTTGGCAGCAGGGGCCTTGCTCACTCACCCATCTCCTGAAGCCTCTGTGGCTTCTTTAGAGAAGCTGAACTCAGATTTAGTTTTCCACTGCAGATTAGAAACCTATGAAAGGGGGGCTGGTGAGATGGCTCAGCAGGTAAGAGTACCCGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGACTCCCTCTTCTGGTGTGTCTGAAGACAGCTTCAGTGTACTTACATATAATAAATAAAAAAATAAAAAAAAAAAGAAAAAAAGAAACCTAGGAAAGAAAAAAAAAAAAAAAAGCCTGGTGTGGTGGCACACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACAGACAGACAGACAGACAGACAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAGAGGGGAGAGGGAGGGAGGGAGGGACCACCCACCCACCCAACAAACCTATGGCTTCCTCATAGTCAAAAGGGATCTTGTGGGGCAGAGCTGGTACCAAGCCCCAAGGCGGAGGCTCAGACTCAGGACAATGTCCTTGGCCTTCTCCAGTCAGAAGCTCCACCAGAGTCAGCCCTAGATGAGCAGCAGCTGCTGCAGAGAGCAGGGGAGAGGTGCCAGCTCTTCGTGTAAAGGGTTCTCAGGCCAGGCAGGGAACCAGAGAATTGCACAGTTTGGACATATTTTATAATCCAACAGAACTAGGATTTATCTATTTATTTACTTGCTTGCTTGCTTGCTTACTTATTCAGTCACTACCCTGCTTGGTTCCTGTGGTGCTCGTCTTCCTGCAGGCGAGGCTAGTGCTCTATGCACAAAGCCATATCCCTTGCTCTAGATTTTAGTTTCAAGTCTGACAGTGACTTGGGTGGCTTGCTTCTCTGACACTTAGCATTTGCTTATGTGAAACAGGGGACTTTGGGGGCTCAGTGAGACTGTGCCACGAGGGGATGCTTGAGTCTGGGCCAGGGCAGCTGGCCTGGCCCCAGATTTCAGGGATACTGAGTCACTGAGCTGTTATAGCACGGGAGGGGTTATGTGAGGGAGTTGAGCTGAGGTAGGAGATGAACCCCACAGATCTGCTCTGTCTGGCAAGGCAGCGTGAGCCTTCTGAGGATTTGTGGCTCTCTCGTCTTTTTATGGAGTTAAGATATAGATTTTAGGGCTGTGGATATAGCTGGGGGTCTAACCTTTGCCCAGCTTGCATGAGGCCCTGGGTGCCATCTCATTACAGAGGGTAAAATACTTTAAACAATTATAAGGGGGATAACACCTGCTCTCTGTACCCAGAACCCCCAGTTCTTAAAGGAGTCCTAGCTTCTGTTCTTAAAGTCTCTGCCTATGGGGGTTGGGATCAGCTATTTCCAAACGCCATTCCTGCCCTGAAAGTGTTCTTCTTTGAAGAGTGTCCACAACTCCAAAATCCAAACAATGTCAGGGATCCTGGACTCTCAGGGTTTCAAAAGACCAAAGACAGAAAGTTTCAGTCACGGTATTCAGAGCTTCCAGTATATCTACATCTGGGGACCAGAGATGTGGACTCACCTGCTTGATGTCGCATAGGCTGTGGGGAGAGTTTGGATACCAGATTTATCTAGATGATGATGATGACGATGGCGACGACGACGACAATGATGATGAATCTCATGTATTCCCAGAATGGCCTTGAGTTTACCATGTAGCCAAAGATGATCTTGAACTTGTAATATTCCTGGTTTCACCATCTGGCTGTTGAGATTACAGGTGTGAACCACCAGGTCTCCGTTATGAAGTGCTTGGGATTTACTTGCTGGGCAAGCAGACATTCTATCAGCTAATGTGGTCCATCCAGATTTTGATTCTTTCTGTGTTGCCATTGGACTCCATGCCTATCCCTCGGTAGGCAAACACTCTAAGAGCCCCAAGTCTAGGTTTTGTGATGCCTAGTTATGACACAGTAGAGCATCTTTACTGGATAATTATCTGTACCGGGCAACTTTTTTTTTTTTTAATTGGGCGTGGTGACATTCACAAAGTTCAACACAGGTCTTCACCGTGCATTCCAGACATCTTCACACAAGCCAGTCGGGGTTTAAAGAGAAGGGCCCCAGGGTGGGAAGCCCCGCGAGTTAGAGAGGCAGGTGAGCCGCACTTGGCACTTTAACAGCCTTAGGAGTGTGGTACAGTCAGAGTGAGCCTGCCAGTCTAACCCTGCTATTCTCAATTAGAGATGAGAAACCCAAAGCCACAAAGGATTGGGTTAAACATGGGGATTTTTGTAGCTTTAGATCGAATTGAATTCAAAGTCCCTGCCGGTTCCCTCCAGGTCTGGAGAGGTGCGAGAGAGGGGAAAAGCAGGAGGCTCTCCGCGTCCGCCCTGGGGGGGCCCCTACTCCACCCCACTGCCCTGGGTGGCAACCTCTTGGCAGGTCCTGGGGAACCCGCACAGGGGAATGGGGTGGTGGTGGAGGGAGGAACAATGGTCCCCTCCCCTCCCTCTCCTCGCTCCCCTCCCTCCCCAGCTGGCTGGAGGGTGGGGTCTCCCCGCCCCGCCTCCCTGCTCCTCCCCCGACCAGGCGATGAGGTAATCGCGCCGCTGAGAGGCACGCGCAGCCGGTGCCCAGCCCGGTCGGTCCCCGCGCCCCTGCCCCTTCGGCCGTCACCCCTGGTACGCTCGGGGGACCCGGGTCTCCTGGCCGCACCATGACCGAGCGTTGCAGCCTGTGGAGTGCGCTGTCCGCCGCCGCCTGCTGCTTCTACCGTGGCTCGCTGGTACAGGTGCAGGTGAGGGGGCGGCATGGGGACCCGGGTCACTGCGCCCCGCCGCTGAGATGGGGACCTCAGTCCAAGAGCATCCCCGCAGGGTCGTGCAGTCCGGACAGCCAGCGAAGGGAGGGGGCGGGGTCGCCATAGCTCACCTCGGGGTGACCAGGGCGCTCCACGGGATGCGGGTGCAGGGTGCCATTCCTTGGACTCTAGACTGCAGGAGACGTGATAGGGAGTTGGAGCTGGAACTCGGGCTAGGAGATGGGGTTCCTTCTGTCACTTATGAGGTCCCTGCTGCTGACCCCAGGCCACCTGGCTCCCTATTGTACCAGGAACGCAGGGCTGGTGTCTAGAGGCTGAATGAGAGGCAGGATGCGCAGTGCACGCTGAGGACACCACGGTGTCACTACCTTCCTTCCATCTGGGTGGGCTCGAGGTACTGGGTTGTAGGTCTCCCAGTCCAGCTGGCCCAGGAGCGCAGGAGCGCACAGCGGCGGTGCGAGGGTTAAACGGAAGGGGGTGGAGGGGAGGACCCGGACCCCGCCTCTCTGCAGAGCATCCTCTGGGGTGGCTGTGCCTGGGGTTGGGATACCTAAGGGAGCCAGGGGAGTGGTGGGAAACCAGCTGGTAGGAAGGGGCTGAGACCCTGACAGAGGTTCTCTGCACTCCTGCCTCTTGGGCATCCTGGGAGATGCGGGGCACCTCACCTCTGAGCTCCCCCAACCTCACACACACACTTGCTCCGAGCCCGCCTGAATGACGGCCCCGCCGGCGGCGGAGCACAGCATCCCTGCACGGGCCAATCAGGCGTGCGCAAGCCGGGAGGCGGTGAGATCATCTCTGACCAATCGCAGTGCTCTGAGCGCAAGGATGCTGCATTCGCACCCCCCCTCCCAACTCTTGGGAGCTAAGGACCCTGAGGCCCAGGGTGAGGAAGAGGTCACAGGGGGTCCTAGGGCTTCCTACCCTAGATGTGTGGAGGACCATCGGTCCTTTTAACCCCAGTTCTGACCTAAGCTCTGCTTAGGGCTGGAAATGCGGTGCCAGTTTCCAGCATCCTTTACAGATGAAGCTACTCAGACCTAGCCAGGAGAAGTGACTGGTCCAAGGTCACACAGGCTGTGTCCTGTCTTGGGGCCACATTCTTTAGTATACAGTCTGTCCCTACTTTGCTTCGGAACTGGGAGGGGAGTTTCAGTGTGTGCAGGGAGTGGTGTGTGTGCAAGGCTGGGTACAGGTTCCATTTCCACATGCCGCTCACCCTTCTTTCCCAGAATTCTGTGCAATTTGAAGGGAGAGGCCAGGGCTGGTGTGAGCACTGCAGAGGGAAATGGGAGAGGCTAATGACCCTAAAAAATTAGGGAACTGCAAAGGCCCAAAACTCGGCTTGGCCAAGACCACTCTGCCCTACCATGGCATTGATTTTTGCTGTGTTGTGGGTGGAGGCCTTGCATTATCCAATCCCGGCCCTTGCCTTACCCTTGTGCACCCAGACCATTCCGACTGTCTGTCTCCAGAACTCTGAAGGCTTCTCAAAGCCCACGCTATCACAGGCCTTACACTTCTTCTAGGTTGCTAGGCTGGTGCCTCGGGCTGCTCTGCCATTGACTGAGGGCCTCAGCTGACTCCACACTGCAGTGTTCTGAGACTTCTGGTTGATCTCCCAGCTCTCCAGGCAGTGTCGCAGCCCTGCCCCACCTGCTACACCATCCATAGACTCGGATCTGCCCACAGGGCCCCACCCTGGCCTCAGCTCTTACCTGCTTATCCATCCTCCACCTCCTGACCAGGCAGGGGACACTGCATCTCTGAAGATGCCTGGGATTGAGTGTAGGGGTCTGCATGGGCTCTCCTAGGGCAGTGACTATCCTGATCTCTTTGAGTTCCAACCCCAGCTTAGGACCCAACGTGAGGCTGGCCCATGTTGAATGAATGAAGTTGGAGAGTCTAGCCATCTCTGGAGCTAGAATTATGGTGGTTGAAAACAGTGGAGATGAGGGTGGAACCTGTGTGGAGTGTGCGTCTTAGATCTGGGGAAGTCTGAGGCGTGACTTGCCAGACTCCAGGAGTACTCAGGAGAGACTGTTCTCTGGCTTTACCTGTCTGTTCACTTCTGACCAGTTCCAGAATGGGAGTCTTGGAGTAGCCATCTGTAGGGACTGGCAAAGCCTCCCAGGGAGAAGCGTAGCTGTGAGGTGAGGCAGATCCTGGAGTCCCACCCATTCTACTGGGCAGAGAGTTAGGCGAGTTCACTCATTTTACTGAGGAAAGAGTTAAGTCCCAGACTGCTCACATGGGGTGGGCTTGCCTCTTTGATGGGGGTGTGCCTGGCAATGGGAACCTCCTCTGACAATAGGATGCCTGGGATTGGTAACCTCTAAGCCTACGACTGCCCACCGTGGGTAGCTGGGAGGGCAGATTTCTGGGCATTGACTCTAGTGAGTGACCTTTGACTTCACTGCAGGGCTGCAGTTTCCAATCTGGCAGGATCACTCTAGCTTGCGTGTGTTTGGGGGGCAGGAGTGTAGAGGATTACAGTAGGCATTGAAGATGCCTGTGAGGCCCACGTCCCTGCTGATGGCTGCCTTTGGGCCCTTCTGCAGGGTTCATATTCCTGTCACCTCGTTGGCCCAGGCACTCGGTGCCTCTCAGACTGACCCGTAGATGGCCTTCCTTCACAATAGCCCTACTACCTCTAGAAGGTTTCATACGATAGTGTCATCCTGGAAGTCTCTAGACCCTCACCTCTCACAGACTTAATGCCCTGGCCTAGAGCAGGAGATGGCACTTTGCCGCTGTCCAGCACCCTGGTGCTGATGGCAGCTGCTTTGCCTGGCCCCTTTGGCTATCTCTTAGCCTGTGGGCTTCCCGGAGGACAGGACTTGACTTAGGCTTCAGTGCACTCACCTTGCCTAGGTACATTCTGATAGAATAAGCTGGGGTTTTACTCTAGCTGGGATGAGGACCCACAGGTGAGGACCATCCAGCAGGACAAGTGTTTTAGCATTGTTGACAATCCCAGGGTGACATGGGGCAGAATGAGTTGGAGGAAGAGAGATGGGGCCGTGGAAACAGATGCCAATCTCGCTCTCCCCGTGCAG
Seq C2 exon
TTCTCCAAGGAGAAGTACATTCTTGACTCCTCGCCAGAGAAACTGCACAAGGAGCTGGAAGAGGAACTGAAGCTCAGCAGCACGGACCTCCGTAGCCATGCCTGGTACCACGGACGCATCCCTCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059013:ENSMUST00000074248:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001719=SH2=PU(9.9=18.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types