BtaINT0134627 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003491 | SLC25A23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:HGNC Symbol;Acc:HGNC:19375]
Coordinates
chr7:19241127-19246240:+
Coord C1 exon
chr7:19241127-19241294
Coord A exon
chr7:19241295-19246089
Coord C2 exon
chr7:19246090-19246240
Length
4795 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
3' ss Seq
TCCTTCTCCACTCCTCCCAGACC
3' ss Score
8.75
Exon sequences
Seq C1 exon
GTGCTGAAGACACGGCTGACCCTTCGCCGGACGGGCCAGTACAAGGGACTGCTGGACTGCGCGTGGCAGATCCTGGAGAGAGAAGGGCCCCGTGCCTTCTACCGTGGCTACCTGCCCAACGTTCTGGGCATCATCCCCTACGCGGGCATCGATCTGGCCGTCTACGAG
Seq A exon
GTCTGTGGCACTCCCTTCTCTGGGGTCTGCTCTCCCTGGGGGTCTGAATCAGTTGACCTCCATAGCTACAGGTGGAGAAGCAAAGCACCATGGGCCATGGGATCCTGGGGAACCTTTCCAGGCATTGCACCCCCATCGCCTGCCACTCTTCCACTTCCTACGATAAGAACCTTCCATCTGTAGTTTGGTCTTCCCAGGTCTCAGGACATGTGAAAGTTGGGGACCACTCCAGCTCAGAGAATCAAGGGAGCAGGCAAAGATGAACTAACACGCCTCTACCTCCAAGCCAATGTTTTCTTTAAGGCCTGCCCCTTTCGGTGTCCATCGCCACTATAAAATCCACACCCATGGTCAGCATCTTGGGACCTTTATCAGGAGAGGAAGGAGCCAGGAGTTTTTGCTGTTTCTCTTCCAGAGGCCTCATCCATTGCTTCTCCCTTCTCCTGGCAGGATCACCAGGTTCTCCCAATTACCACAGAAGTCCCCAGGCATCCCTGCCCCAGTGTTTGTATCCAGCCCAGTTCCCTAGGTGGGCAGCCTGTCCAGTTGCCAACTCAAAAGGGCCCTGGGCTTGGTTGAATGCTTTGCTGTTGCCATCTTGAATTTTTTTTTCTTTTTATTTACTTATTTGTTTTTGGCTGCACTGGGTCTCCATCGCTGCACTCAGGCCTTCTCTAGTTGTGGCATGCGAGGGCTACTCTCTAGTTGCGGTGTACAGGTTTCTCACTGCCGTGGCTTCTCTTGTTGCAGAGCACAGGCTCTAGGGGGCGTGGGCTTCGGGGGTTATGGCACTTGGGCTCTAGATCTCAGGCTCAGTAGTTGTGGCTCACGGGCTTAGTTGCCCTGTGACAGGTGGGATCTTCCCGGACCAGGGATCAAACTCATGTCCTTTGCACTGGCAGGTGGGCTCTTAACCTCTGGACCCCCAGGAAAGTCCCATCTTAAAATTTTCAGTAATCTTTGAACAGGGGTCCTCCCTTATTTTTATTTCACACTGGGTCCCACAAATGACATAACTGGTCTGATCTGAGATCCCCCATACATGCCAACCCTACCTGCCGGACCAGCACCCAGCATCTACATAAATAGCCAAATGAGATAAAGCTTCACTCATTCGCTCATTCATGTGTTGGTTTAGCTACTGTCTCCTAAGCATCCATAAGTGCCTGGCACTGTGCTGGCTGCTGCATCCGAGGTGGTTGTTCAGTTGCCAAATCGCGTCCAACTCTCTGTGACCCCATGGGCTGCAGCACACCAGGCTTCCCTGTCCTTCACTATCTCCCTGAGCTTGCTCAAACTCACGTCCATTGAGTCAGTGATGCCATCCAACCATCTCATCCTCTGTCGCCCCCTTCTCCTCTTGCCCTCCATCTTTCCCAGCATCAGGGTCTTTTCCAGTGAATCAGCTCTTTGCATCAGGTGACCAAAGTATTGGAGCTTCAGCACCAGTCCTTCCGATGCATGCATTCAAAGAGTACAACATAATTCTTGTCCTCCTGGGACACCCCTCCAGTGAACAAAGAAGGCAGTAAACCAGCAAATAAATAGTTTCAGATCCTGAAAAGTTCTCAGAAGACAACAAAGAGAATGTGTAATCAAAAGTAGCTGTGGGCAGGAGGGGGGCATTGCTGGGAATGCCTCTGAGAGGTGGTGATGGAGTGATGGGCTGAATATATATCAAAAGAGTGTGAACAAAGCAGAGGGCACAGCAATGCCAAGGGCCAGACACAGGAATGAATTTGGTCTCTTGGAGGAGTGAAAGTCTCTCTTTTTTCTATTACAGCTTATTACAATATATAGAATGTAGTTCCCTGTGCTATACAGTAGAAACTTGTTTATTTTATATACTGTAGTTTGTGTCTATGGGACTTCCCTGTAGCTCAGATGGTAAAGAATCTGCCTGCATTGCAGGAGACCTACGTTTGATCCCTGGATCAGGAAGATCCCTTGGAGAAGGAAATGGCAACCCGCTCCAGTATTCTTGCCTGGAGAATTCCACAGACAGAGGAGCCTGGTGGGCTACAGTCCATGGGGTTGCAAAAAGTCAGACACAACTGAGCTACTGACACACACAAACAGCTTGTATATGCTAATTCCAAGCTCCAAAATTATCCCTCCCGCCTCACTTTTCCCTTTTGGTAACCATGAGTGTTTTTCTGTGTCTGGAGCCTTGTTTCTGTTTCACAGATAAGTTCATTTGTATAGTATTTTAGATTCCACATACAAGTGATATCATATGGTATTTGTCTTTCCCTGACTTACTTCACTTAGTATGATCATCTCTAGGTCCATCCATGATGCTGGAAATGGCATTATGGCATCCTTTTTTATGGCTGACTAGTAGTCCATTGCATGTAAGTACCACATCTTATATGGTACTTATTTAAGTAAGCACTTATATGGTCAATGGACATTTAAGTTGTTGCCCTGTCTCAACTATTGTGAATAGTGGTGCATATATCTTAGTTGTGTCCAGATATATGCCCAGGAGTGGGATTGCTGGATCAAAGGGCATCTCTATTTTTTAAGGAACCTCCATACTGTTTTCCACAGTAGCTGTACCAATTTATATTCCCTCCAAAAGTGTAGGAGGGTTCCCTTTTCTCCACACCCTCTCCAGCATTTATTATTTGTAGACTCTTTAATGATGGCCAGTCTGACCAGTGTGAGGTGATACCTCCCTGTAGTTTTGATTTACATTTCTCCAATAATTAGCAACATTGAGCATCTTTTCACGTTCCCATGGGCCTTCTAAATGTCTTCTTTGGAGAAATGTCTTTTTAGGTCTGCCCATTTTTTGATTAGATTGGTTGGTTGTTTTGCTGTTGAAGAGTGGCAGTCCTGAGTGGCCGGATGGAGCTGACATCAGCAAGGACTCAAAGATCACGAGTTTGGGTTTCTCCCAAAGGTGATAGGAAGCCATTAAGACTCCTGAGCAGAAATAAGACACAACCTTATTTCATTCATTCTTCACCCCAAAAGTGATTTCAGAGGTCTAAGTAGTTTGAGAAGCCCTGTGCCCTCTTGACATTTCAAGATCTTAATTAGTCTCTTAAAGACTCTGAGAAGTCCTGTAGAAACATGATTTACTTTTTTTTTTTTCACTTTAAAACATGTTTTATTTCCTTTTTTATACTTTAACTTTATTCACAGTTATTAATATATCTTTGAAATTCTAAGCCTCTGATTTTAACATCTAAAATTTTTAATTATTTTATCTCATTTTCCTTAGTTAGATTTACTCTTTTTTAAGTGCAGTGTTGGCCATTCTTATCCAGGTATCAAAACCTCTTTTTAACAGAACTGCTCTTAAAAACTCATTAAACACCTAGTTGGCTAATGCAGCTCTAGCCCCAAAGTCAGTATAGTAAACACTTCTCATTTGCCCCTTCCACACCCAGACCAGACATCACCAATCCATTACCACACTTGAGTCTCTCTCAACACAGTTCTGGGAAGCCATTAGCAATGGATTAAGACTGACTCAGGAAATGCAATTTATGAGCCTTTCCAGTCCCAAGGTCAGAAAAAAGATCCTGGACTTACAGAGGCCTCACAGAAGGCTTCAGAAAGGATTGGCCAAGAGCATAGCTCTGGACTTGGGGGTGACTCTGAATGCTGATTGTCACCTTTATCTTGTGGCTTTGGGCAAGTAACTTCCCTTGAGCCTCAGTTTCTCATCAGTGAAATGGGGATAGTAATTGTTATTTAGTCATCAGTCATGTCTGACTCTTTGCAACTCTACGGATGTAGCCTGCCAGGTTCTCTGTCCATGGAATTTCCCAGGCAAGAATACTGCAGTGGATTGCCATTTCTTTTTCCGGGGACCTTCCCGACCCAGGGATCAAACCCACATTTCCTGATTGGCAGGGGGATTCTTTACTGAGCCACCAGAGAAACCCATAAAATAGGTCTAATTGGGCTAAAATCAAGGTGTCAGCAAGGCTTCTTTCCTTTAGGAGGCTCTAGGAGAGAATCCATTTTCTTAGATTTTCCAGTTTCTGATGGTCCACGTTCATTGGCTCATGGCCCCTTCTCCATATTGAAGGTCAGCAACATGGCCTCTTCCCCCACCTCGTGTCTCTCTCTCATGTCTGTTTCTGTCATCACTTCTCCTTCTCTGACTTTTAGAAGGAGACTTGTGATGACATCAGGCCCACTTGAAAGCTCTAGCATAATCTCCCACCTCCAGATCTTTAACTTAATCCTATTTGCAAAGTCCCTCTTGCCAAGGAAGGTATCCTATTCACAGATTCCAGGGATTAGGGGAGGAACAATAGGGGGCCATTATTCCACATACCAGAAAGGGTCTGTGTGAGTGTGCACAGTTGCATCTGACTCTTTGCGACCCCATGGACTGTAGGCCACCAGGCTCCTCTGTCCATGGGATTTTCCAGGCAAGAGTACTGGAATGGGTAGCCATTCCCTTCTCCCCGGAATCTTCCCCACCCAGGGATCAAACTCAGGTCTCCCATATTGCAGGCAGATCCTTTACCATCTGAGTCATCAGGGAAGCCCAGAAAGAGTCTAGGTAAGGTTTTTTGTTTGTTTTTTGTCCCCATGGTGCAGCAGGAATGTGGGATCTTAGTTCCCCCACTAGGGATGGAATCCAGGCCCCCTACATTAGAAGTGCTCAGTCTTAACCACCAGACCACCAGGGAAGTCCCCTTTAGGTGAAGTCTAAGCAAGAGCCTGCTTGGCTAAGACCAGCTGTCACAGGATACAGAAGCCAGCCAGCAGGGTTCTGGTTTCACCTAGCTCCAACCCACCCTCCTTCCTTCTCCACTCCTCCCAG
Seq C2 exon
ACCCTGAAGAACCGGTGGCTCCAGCAGTATAGCCACGATTCAGCTGACCCGGGCATCCTCGTCCTCCTGGCCTGTGGCACCATCTCCAGCACGTGCGGCCAGATAGCCAGCTACCCACTGGCCCTGGTCCGGACCCGCATGCAGGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003491:ENSBTAT00000004536:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(64.0=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(10.5=17.6),PF0015322=Mito_carr=PU(38.7=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]