MmuINT0145570 @ mm10
Intron Retention
Gene
ENSMUSG00000046329 | Slc25a23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:MGI Symbol;Acc:MGI:1914222]
Coordinates
chr17:57047186-57052849:-
Coord C1 exon
chr17:57052682-57052849
Coord A exon
chr17:57047337-57052681
Coord C2 exon
chr17:57047186-57047336
Length
5345 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
3' ss Seq
CCTGCTCCTTTCTCTTCTAGACC
3' ss Score
12.35
Exon sequences
Seq C1 exon
GTACTAAAGACTCGGCTGACTCTACGCAGAACTGGCCAATACAAGGGGCTCCTGGATTGTGCAAAGCGGATCTTAGAACGTGAAGGGCCCCGCGCCTTCTACCGTGGCTACCTGCCTAATGTGCTGGGCATCATCCCCTATGCAGGAATCGACCTAGCTGTCTACGAG
Seq A exon
GTCTGTGGATAACCACCCTCCCTCCCCTCTCCTTCTGGGATCTGGCCTAGGTCACTCCTTGCTAGTTGAGTAGACTTCTTGTAACTTGGATGGGCAATCATGGGCTTGAAAACTATGTTGGGTCTTGGAACCCTGGGAAGACCCTCCAAATATCAGGCCGGTGTCTCCATCACTCAGTGTTGCAAAAGCCTTGTTTCTGGCTCCACATGGTGGCACACAGTTGTTGCCATGGGACTTGAGAAGCTGGAGTAGGATCTGGGTTCAAGGCCATCCTGCATAAGGTAGTCAGTTTCAAGATAGCCTGGTTTGTCTTGTGTAGCGATGGTGGCACATGCCTTTAATTCTAGCACTCAGTAGGCAGAGGCAGGAAGATCTCAGAGTTCAAGGCCAGGGTGAGTTCCAGGACAGCCAGGGCTGTACAGAGAAACCCTGTCTCAAAAACAAACAACAAACAAAACATTTTTAAAACATTGCTGCCTTAAGAAATTAGCAACAACCAAATAGAAAAATGAGGGCTAAAGAGTGGCTCAGAACTAGGCAGTGGTGGCGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAACAAAAAACAAAAAAAAACAAAAAAAAAAAAAAAGATGGCACAGAGTCCTTGCTGCTGTGGGCTGTGACAGATGTCTTGAATTCAGACCAACATCCAGGTCTAACAAGTCCTTTTAAGTCTAGCTTCAGGGAATCCACCGCCCTCTTCTGGTCTCCAAAGGCATTGTACTCACACACAGTTCAGCGGTTAAGATCACTGGCTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACACGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGATAGCTACAGTGGACTCAGATACATAAAGTAAATAAATAATTCTTTAAAAAGAAAAAAAAAAAAAAACTACACGAAGCCAGGTATGGAGGTTGGTGTCTGTCATCCAATACTCAGAAGGCTGATGCAGGAGAATTACCACAACTAGGCATGGTAGTAATGGTAGTGTAGGCCTTTAATCCCATGCTTTGGGAAGCAAAGGCAGAAGGAGCTGAAGGCCATCCTGGGCCACAGAGAGAGAGAGGCCCTTTCTCAAAATAAGAACAATAGTAGAACCATTCTCCCTCTTGGGGTGTTGGGGATGAAACCCAGGGGTTTACATTTGCCTCCTTGGGGTTATGGAAGCTTTAGTTTTATAGGAACTGGAAACCCCTCCAGCTCCTTGGAATAGTGAACACAGAGATGCCCATCATCCCCAAAGTATGTATGGGTTCTAGCCTCATCTCTATGCCAACAAATTATTTTTCTCCCCCCCCCCCATTTTTTAAATATTATTTTCAAATATTATTATGTATGGTTGTTTGCCTGGATGTGTATGTGGTGCCTGTGGAGGCTAGAAGAGGGTGCCAGATCCCCTAAGCTGGAGTTACAGATGGTTGTGAGTCGCCCTTTGGATGCTGTGTATTAAACCTGGGTCCTCTGCAAGAGCAGCCAGTGTTCTTAACTGCCGAGCCTTCTCTCCAGCACCACCACCACCATTTGTTTGTTTGTTTGTTTGTTTGCTTTGTTTTGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGACTGTCTTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACTGCCTCTGCCTCCCAAGTACTGGGATTAAAGGCATGCACCATCACGCCCGGCTTTTTTCTTTTTTCTTAAGACAGACTTATGTAGCCTTGGTTGACCTCAAACTTGCTGTGTAGCTGAGGATGAGTTTGAACTTCTGATCCTCTTGACTATCCCTCCAGAGTGCTGGGATGACAAGTCTACGCAAGCAGGCCGAGTTAACATATTGCTGGGATGGAAACCAGGGCTTTGTGCATGTTAGACAAATGCTCCACAAGCTGAAACTTGGCTCTTTTGTTTGTTTGTTCATTTAAATATGGGAGCTCACTGTGCATCCCATGATGGCCTGAACTCATGGTAATGCCCCTGCCTCAGCATCCTGAGTACTAACATTACAAGTATGTATCACTATCTCTGGCAATGGAACAGTTCGCTCTTGTGTCTCTTCCCTTCCCTCCCCCTTCCCCTCCCCCTCCCCCTCCCCTCCCCTTCTCTTCCCTTCTCTCCCCCCCTTCTTCTTCTCTTTCTTTCTCTGTCTCTGTCTCTCTCTCTCTTCGCCCCCACCCACCAGGCCAGAAGACAATGATCCTGAGGTCATTCATTCCTCAGCTACTGTCTACCTTATTTTCTGACACAGGATCCCCCCCACTGGGACCTGGGGCTCATCAAGGAGGCTAGACGGGTTCGTCAGTGAACCCCTCCTGCCTCTGCATCCCCATGAGTGTGGTTACAGGTGTGCATAACCATGACTGGCCTTTGACAAGGGTACTGAAGATCAAACTCAGGGCCTCATGCTTACATGGCCAGAGGTTTTCTAGGAACTGAGCCATCCCCCTAGCCCTGAACAGCTCTTTTTTATGCTTCTGGCCCTTATGTGTCCATGTGTCACACAGCATGTGTGTGGAGGTCAGAGGGTACCTTAAAGGGATTGGTTCTCCTTTCACCACGTGGGTTCCAGTGATTGATTGTAGGCCATCTAGTTTGGCTGTAAGCACCTTTAACCACTGAGCCATCTCACCAGCCCATAACAGCTCTTAATTACCCATTCAATATCTATTTTCTCAGCACCCACATAGTGGCTCTCTTTGCCACCTGGAGCTCCAGTCCCAGTGGACCAGATGCTCTCTCTCTTCTGGCCTCCGTGGGCACAGCGTGTTTTTGGTATATGGACAGACATGGAGGCAAGACACCGATACACATAAAATAAAAGTAAAGAAAGTTAAATAAAATAAAAATTAAAGGCACACGCTTTAAATCCCAAAACTTGGGAAGCAGAGGTGAGTAGCTCTCTCTGAGTTTTGAGTCCAGTCTGGTTTATATTGTGTGTTCTAGGCCAACCAGAACTACAGAGAGATCCTGCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGTTGGGGAGATGGCTGAGTTGTTAAGGTACCCACCACACAAGTATGAGGACATGAGTTCTGATCCAGAATCTAAATAAAATGTCAGGAAGAGCATCTGCCACCCTGGGGCCGGGAGGTGGAAGCAGGAGAATCACTGGGGTCAGTGACTGAGCTCCAGGTTCCATGAGACGCCCTGTCTCCTGTGACAAGGTGACAGTGCTTTGGGGAGACACCTGATGTCAACCTCTGGCCTCCACATGTCCTTGAGTGGGCATGCACCCCAGCATATACACAAAAGCACACATAGCCCCCCCCCCCCCGCCGCCAGAAAATAAAAAGGAGAAAGAAGGAGAAACGGGGTGGGGGTGGGAGAGAAGATTTTGGAAGAATGTTCCAGAAAATGCTAGAGCTTTGGGCACATGGCTCCTTTCCCCTCAGTTTCTTGTCTGCCAAGTAGGAACCATATGAATAGGCATCTGCCAATGATGAAATATTCTGAGGTTGTAGTGAGCACCACTGTGGGGGGAAGAGGAAGGCGGGGACTCTTGCTTACTGGCTCACCCAGGCTGACTAGCCTGCCAGCCCCAGAGATCCTCTTTCTACCTCCCCAGGGCTGGGTTTACAGGTGTCCCCAACCTCTCCCAGTGCTGGTGAAGAGGATGGGACTTGAATTCAGGCCATCTAACTCATACACAGTCTACACCTGTGGAGCCATCTGCCCGGCCCCTTCTCTTTTTGTTTTAAGTTTTCCTTCTTTATTTTTAGTATAGACAATGTTTCACTTTATTGCCCAAGCGAATCACAAGCTCCTCGGCACAATCAATCCTCCTGCCTCAGCCTCCCAGGCAGCCTGATTGACAGATTGTCTCCCACTGCCGTTCCCTGCAGCACTCTTTCACTGTAAATTTATCACTCCTATTATTTTTTATTTATTTTCATTTTATGTGCATTGGTCATTCTCAGCTACATAGTACATTCGAAACCCATCTTGGCCAAGCCTTGGTTTGTTTGGTTTTGAGACACAGATTCTCTATATATAGCCTTGGCTGTCCTGAAACTCAATCTGTAGAGCACACTGGCCTCAAACTCATGTAGCTCTACCTGCTTCTGCCTCCAGAGTGATGAGATTAAAGCATCCATGCCACCACCATCCTAGCCCCACCATACATCTTTAAAAATCCAAAAGGCTGCCAGGCGGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCTAGCCTGGTCTACAGAGTGAGTTCCAGGACAGACAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAATCCAAAAGGGTGGTTGCACACACCTTTAATCTCAGCACTTGGGAGGCAGAGGTAGGCAGATTTCTAGATTGAGGCGTGCCTGATCTACAGAGTTCCAGGATAGCCAGGGCTACACAGAGAAACAGTGTCTCTAAAAACAAAAATAAACCCCAAACAAAAAACCCGAAAGGATCCTTAATCCTGAATGTACAGTCCTTCCTGCTGTGGACAGTCACTGCAGAGGTCCTAGGCATGGGGTATGCACAGTACAGGAAACAAAGGAGAAGGGATACAGGGAAACTGCTCATAGTAGCCAGGCTGGGTAGCACAAGCCTGTCATACCAGCACCGGGGCGGTTAAGAAGATGAAAACTTCAAGGCCAGAATGGGACAGACTAAGCCCATGTTCCAAAATTAAAGTTTTAAAAGCAAGAGATGTAGCTCAAGTAGTGATGCTGAGAGCCTGGCTCACGGGTAGAGCACCCCCCAACACTGCCACCTAGAATCCTCCAGTGAAGGTTCGGGGTGTGGTCAGTGTGGAGTGCCTGCCTAGAATCCCCCAGTGGTGCGCTGGGGGCGTGGTCAGTATGGAAGGCCTGCCTAGAATCCTCCAGTGAAAGGGCTGGGGGCGTGGTCAGTATGGAGGGCTTTCCTAGAATCCCCCAATGGAGGGCTGGGGGGAGTGGTCAGTGTGGAGTGCCTGCATAGACTCCCTCAGTGGAGGGCTGGGGGGATGTGGAACTGGCCCAGTGGGGAAGAAAAAACACATCATCTACTGTAGAACCAGCAACTGTGGTACACAGAGCTGGCAGCAGAGATCCTGACAACAGGATCTTCCCGTCTGCAACTCTGAACCCACCTGCTCCTTTCTCTTCTAG
Seq C2 exon
ACCCTGAAGAATCGCTGGCTTCAGCAGTACAGCCACGAATCCGCTAACCCAGGCATTCTCGTGCTCCTAGGCTGTGGCACCATCTCCAGCACCTGTGGCCAGATTGCCAGTTACCCTCTGGCACTGGTCCGTACCCGAATGCAGGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046329:ENSMUST00000040280:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(81.0=97.9)
A:
NA
C2:
PF0015322=Mito_carr=PD(17.2=19.6),PF0015322=Mito_carr=PU(62.5=68.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types