BtaINT0134946 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016775 | SLC27A1
Description
Bos taurus solute carrier family 27 (fatty acid transporter), member 1 (SLC27A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001033625]
Coordinates
chr7:5535303-5536013:-
Coord C1 exon
chr7:5535849-5536013
Coord A exon
chr7:5535450-5535848
Coord C2 exon
chr7:5535303-5535449
Length
399 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGC
5' ss Score
2.13
3' ss Seq
AGCCAGATCTCTGTCTCTAGGAG
3' ss Score
5.97
Exon sequences
Seq C1 exon
GTGACGTGCTGGTGATGGATGAGCTGGGCTACATGTACTTCCGGGACCGCAGCGGGGACACCTTCCGCTGGCGTGGGGAGAACGTCTCCACCACTGAGGTGGAAGGCGTGCTAAGTCGCCTTCTGGGCCAGACAGATGTGGCTGTGTATGGAGTGGCTGTGCCAG
Seq A exon
GCAAGCTGGGGCTCTGGGGGTGGTCCCAGGGTCCTGGGGGCAGCCCCAGAGGAGCCCAGCCAGGAGGAACTTGGAGGTACAGGTGCCCTGGTAGGCAAGACCTAAAGCAGTGCATGGCCTGGACAACCACTCAACAGGGTGGTGTCCTGGATCTGGAATTATTCCTCATGCCTGATGTTGCGCTTCAGTTTCCTCATCCAGGAAATGGGCTCATGAGATCAGCTGTGGCTCAAGGTTGCAGGGAGTGCAGCAGGAGCTCAATAAAGGGTTCACTGCTTCAGCGAGCATTATCCCAGGTGGATAGGGCTGGAGGTCAGAGGCCAGGGGCTGCCACTGGAGGATGGATCTAGTCTCATGGTGGGGCCAGGGTGGTGGTCTCAGCCAGATCTCTGTCTCTAG
Seq C2 exon
GAGTAGAGGGCAAAGCAGGCATGGCAGCCATCGCAGACCCCCATGGCCGGCTGAGCCCCAACGCACTGTACGAGGAACTGCAGAAGGTGCTGGCGCCCTATGCCCGGCCCATCTTCCTGCGCCTCCTGCCCCAGGTGGACACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016775:ENSBTAT00000055878:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(11.4=42.9),PF131931=AMP-binding_C=PU(30.3=41.1)
A:
NA
C2:
PF131931=AMP-binding_C=FE(64.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTGCTGGTGATGGATGAG
R:
CTGTAGTGTCCACCTGGGGC
Band lengths:
310-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]