BtaINT0134950 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016775 | SLC27A1
Description
Bos taurus solute carrier family 27 (fatty acid transporter), member 1 (SLC27A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001033625]
Coordinates
chr7:5544871-5545190:-
Coord C1 exon
chr7:5545029-5545190
Coord A exon
chr7:5544941-5545028
Coord C2 exon
chr7:5544871-5544940
Length
88 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
AACACCCGTGTCTCTCTCAGATC
3' ss Score
9.96
Exon sequences
Seq C1 exon
CGGTGGCGGAGATGAGCGGGGAGTTGGGCAAGAGCCTGGTCAAGTTCTGTTCTGGAGATGTGGGGCCTGATGGTGTCTTCCCGGACACCCAACTCCTGGACCCACTGCTGAAGGAGACCTCCACAGCCCCCCTGGCGCAGCCCCCTGGCAAGGGCATGGATG
Seq A exon
GTGAGTGCAGGTGGGATCCCCGTGCCTATCCTGTCCCCTCGTCCCACCCAGCCCAGCCTCTGGTCCCCAACACCCGTGTCTCTCTCAG
Seq C2 exon
ATCGACTCTTCTACATCTACACGTCGGGGACCACGGGGCTGCCCAAGGCTGCCATCATCGTGCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016775:ENSBTAT00000055878:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAGCCTGGTCAAGTTCT
R:
GGTCCCCGACGTGTAGATGTA
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]