BtaINT0134952 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016775 | SLC27A1
Description
Bos taurus solute carrier family 27 (fatty acid transporter), member 1 (SLC27A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001033625]
Coordinates
chr7:5543875-5544148:-
Coord C1 exon
chr7:5544057-5544148
Coord A exon
chr7:5543985-5544056
Coord C2 exon
chr7:5543875-5543984
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
ATCGAGTCCACTCTCTGCAGGGA
3' ss Score
4.8
Exon sequences
Seq C1 exon
GTACTACCGCATCGCGGCATTTGGGCACTACTCCTACAGCATGCAGGCAGCAGATGTGCTCTACGACTGTCTGCCCCTGTACCACTCGGCAG
Seq A exon
GTACCACGGGGCGGCTCGGGCGGGGAAGGGGGCGGGGAACCGGGGACCCCTCATCGAGTCCACTCTCTGCAG
Seq C2 exon
GGAACATCATGGGCGTGGGTCAGTGTCTCATCTATGGGCTGACGGTGGTCCTGCGCAAGAAGTTTTCAGCCAGCCGCTTCTGGGATGACTGCGTCAAGTACAACTGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016775:ENSBTAT00000055878:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.7=74.2)
A:
NA
C2:
PF0050123=AMP-binding=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGCACTACTCCTACAGCA
R:
CGTGCAGTTGTACTTGACGCA
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]