BtaINT0135172 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006957 | SLC2A8
Description
Bos taurus solute carrier family 2 (facilitated glucose transporter), member 8 (SLC2A8), mRNA. [Source:RefSeq mRNA;Acc:NM_201528]
Coordinates
chr11:98164334-98166064:+
Coord C1 exon
chr11:98164334-98164433
Coord A exon
chr11:98164434-98165864
Coord C2 exon
chr11:98165865-98166064
Length
1431 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TCTCTCCACCCCACCCTCAGGCT
3' ss Score
8.28
Exon sequences
Seq C1 exon
GTCTATATCTCTGAAATTGCCTACCCTGAGGTGCGAGGGCTGCTCGGCTCCTGTGTGCAGCTGATGGTAGTCACAGGCATCCTCCTAGCCTACCTGGCAG
Seq A exon
GTATGGTTTTCTTATTATCTCTTGTGACTGTTCATGGATGTTTGACTATCTTACAGATGTAGAAACTGAAGTTCAGAGAGGTCAGGGGACTTGCCCAAGGTCACACAGCCACTGCCCAAGATGCCACCTTCCCAGACCACTTCCCTGAGAACCCTGGGTCGTGTGGGTCTTGAGACAGTATTCTGAGGAGAGCTGGAGAAGGTGATGTCCTCATCTCCCCAGAGCAGAAGCCCATTCTAGGAGTGTAGGGAGGGCTGACGAGTTAGAGCAGTAGCTCCCTGTGCGGTGACCAGCTAGGATTCTGGGGCTGGAAGGAAAGTCTTTAGCCTAAGAGCTTGGAGGGCGCAAATGTGTGTCTCCCTCAGAATCAGTACTGGATTTGCAGCCTGAAGGCGGCAGGTTCCAGAGAACCCGAGGGTCAGCTGGAGCCAGCATGAGGAAGCTTCCAGAAGCAAGAGGAAGCTTCCAGAGGCACCCTGGAATGAACTGGGGTAGAGGAAAGGCAGGCTTCATATCTGACAGCCCTGGATTAGGGGAATATGCCACTTATTAGCTGTGTGACCTTGGCCTAGTCAACTGCCCCTGGGAGCCTCAGGTTCCCTGTCTTCACGTGGAGATTAACTTTACCTAGTCCAAGGCTGCTGAGGGATTAAATTAACTGATGCTGTAAAAAGTGCCCAGCAGCAGGCCCCGATAAGAATTGTCAAAGGATGGCCTGAGAACCATGTGGGAATGGGGGTTTGGGGCCAGATGGGCAGTGGCGGGGCCCGGGGCATGTGTCCTCTGGTTCCTCAGAGTGGACAACATGCAGGTCCGTGGTCTTTCCTTTCTGCCCACTTAGCATCCTGACTGTCATTCAGAGTCCTGGCCGCAGTCTAGCTGCCTTGTGGGGCCAGCAGTGTCCGAAAGCCACTGTGTAGACACTGATACTCAGGGTCACGTGGGTGTAGTTACATCTATAGGATTTCCTCCAAGTCATCATAAGCCACACTTTAACTGCTCAGCTTCTATGAGTTCTGATTGACGTTTTTCAGTGAAAAATGCCCCCTTCCTCTCTGTCCCCCTTCTTCCCGGAGGAGCCAGCCTTGCCTGCTTCTCAGTCCATCCACCGGGTGGAGGCCTGTGCACACATGGTCTCTTGCCGCCCCTCCCTGTCAGACCCCTGGTGCCGTATATCACGTATATCTCAGCAGTACAGAGCGAGCACCTTTGTTTAGTGGCTGCATAAACCTTCACTGATATACGCCCCCCCGCCTCGTTTCCACACTTAGCAATAAAACGACAACATCAATGACAAACCCTGGGGAGTCCTGCAAAGACACTAGGGTCCCCACCTTTGAGCAGAGTCCCTGGGTTGGCAGGAGGCAGGCGCTCCCCGAGAAGATCCGGGCTGGCTCACACCACTCTGACATCTCTCCACCCCACCCTCAG
Seq C2 exon
GCTGGGTGCTCGAGTGGCGCTGGCTGGCCGTGCTGGGCTGTGTGGCCCCCTCCTTCATGCTGCTGCTCATGTGTTTCATGCCTGAGACCCCTCGCTTCCTGCTGTCTCAGCACAAGCACCAGGAGGCCATGGCCGCCATGCAGTTCCTGTGGGGCTATGCCCAGGGTTGGGAGGAGCCTCCCCTTGGGGCTCAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006957:ENSBTAT00000009144:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(7.4=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(14.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCTGAAATTGCCTACCCTGA
R:
CTGGTGCTGAGCCCCAAG
Band lengths:
294-1725
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development