GgaINT0126011 @ galGal3
Intron Retention
Gene
ENSGALG00000002982 | F1NAR8_CHICK
Description
NA
Coordinates
chr17:7610939-7611476:-
Coord C1 exon
chr17:7611377-7611476
Coord A exon
chr17:7611151-7611376
Coord C2 exon
chr17:7610939-7611150
Length
226 bp
Sequences
Splice sites
5' ss Seq
TGGGCAAGT
5' ss Score
2.48
3' ss Seq
AACCAACCCGGCTCCTGCAGGGC
3' ss Score
5.17
Exon sequences
Seq C1 exon
GTCTACATCTCTGAGATCTCCCACCCTGGGGTGCGAGGCATGCTGGGCACGTGTCCTCAGATCATGGCAGTGCTGGGCTCCCTCATCCTCTACGTGCTGG
Seq A exon
GCAAGTATCTGGGTGTGCAGTGGGAAGGCAGGATTGATCCTTCACGGGTACGGGGAAGCGGTGGAGTGTCCATCCCTGGAGGCATTCAAGAGCCGTGGCGATGTGGCACTTGGGGACGTGTTTAGTGGCTGTGGTGGGGGCTGGGGCAGGACTCGATGATCTTAGAGGTTTTTTTCCAACCTCAGTGATTCTATGATTCTCCTCCCAACCAACCCGGCTCCTGCAG
Seq C2 exon
GGCTGCTCCTGGACTGGCGCTGGCTGGCCGTGGCAGGGGAGGTGCCCGTGCTCACCATGATCCTCCTGCTCTGCTTCATGCCCAACTCGCCCCGCTTCCTGCTCTCCCAGGGGAAGGAGGACGAGGCCCTGCGCTCCCTGTGCTGGCTGCGAGGCAAGGACACAGACTATGCCCAGGAGTACGAGCAGATTAAGGACAGCGTGAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002982:ENSGALT00000004719:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(10.9=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAGATCTCCCACCCTGG
R:
TGCTTCCTCACGCTGTCCTTA
Band lengths:
303-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]